Pectobacterium araliae: PEC302110_29050
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Entry
PEC302110_29050 CDS
T10257
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
parl Pectobacterium araliae
Brite
KEGG Orthology (KO) [BR:
parl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parl03019
]
PEC302110_29050 (hrpB)
Enzymes [BR:
parl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PEC302110_29050 (hrpB)
Messenger RNA biogenesis [BR:
parl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PEC302110_29050 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
ResIII
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BES85808
UniProt:
A0AAN0KJC9
LinkDB
All DBs
Position
complement(3266103..3268565)
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AA seq
820 aa
AA seq
DB search
MILPPVSAVLDDVITALHTAPQVLLNAPTGAGKSTWLPLQLLQQGNLNGRIIMLEPRRLA
AKSVAWRLAQQLGEEPGQTIGYRMRSETCVSRATKLEVVTEGMLTRVLQQDAELQGVALI
ILDEFHERSVQADLALALLLDVQQGLRDDLKLLIMSATLDNARLAALLPDAVCVVSEGRS
YPVARCYAPLNSQERLEEGVARQVRRLLSEEDGSLLLFLPGVAEIRRVQSLLENSVSGET
DLCPLYGALTLAEQQKAILPAEPGRRKVVLATNIAETSLTIEGIRLVVDSGLERVASFDV
KSGVTRLVTQRISQASMVQRAGRAGRLTPGICWHLCSREQAERAAAQSEAEILNSDLSSI
WLDLLQWGCTDVAQLTWLDTLPAPALYAARQLLRQLGITDEQDRLTAEGRKIAALGCDAR
LATMLYAASQQSSDALTTAGCLAAILEEPPRSGSINLADWLHRPLSHWLRRAKQLTRRLS
TTSGHIDGGEADWLLAQAFPDRIARRRSQDGRYQLANGSGAMMSADEALSGTEWLLTPAL
LQNDRLVQNKQSADARILLALPLDIERLERRLPGLINERNVVHWDEEKGTLRASQRDQIG
CLTLRTRPLNKPSDEALQQAMLSWIRDQGIRALNWDAAALQLRARLQCACQWLPEVHWPR
VDDDTLLATLEIWLQPSLSGVRDLRALHQINLSDALLRLLDWSLRQRLDSALPTHYTAPG
GSRLPIAYYDDKPPVLSVRMQEMFGEQHSPLLAEGRVALVLELLSPAQRPLQITRDLAAF
WQGTYRDVQKEMKGRYPKHVWPDDPANTVPTRRTKKYQNH
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
gtgattttaccgcccgtcagcgccgtgctggatgatgtgataacggcgctacatactgcg
cctcaggtgctgctcaatgccccaacgggggcggggaaatcaacctggctgccgttgcaa
ttactgcaacaaggcaatttgaacgggcgcatcatcatgctggagccgcgccgactggca
gcgaagagtgtggcctggcggttggcacagcagctaggtgaagaaccggggcaaacgata
ggttatcggatgcgctcggaaacctgcgtgagtcgtgcaacgaagctggaagtggtcacc
gaaggcatgctaacccgtgtgctgcaacaggatgcggaactgcaaggcgtggcgctgatc
atccttgatgaattccatgagcgtagcgtgcaggctgatttggcactggcgctgctgctt
gatgtgcagcaagggctacgtgacgatttaaaactgctgattatgtccgcgacactcgac
aatgcgcggctggccgcgctgctgccggacgccgtctgcgtggtttccgaaggtcgcagc
tatccggtagcgcggtgctatgccccactaaatagtcaggaacgattggaagagggcgtt
gcgcgacaggtgaggcgtctgctcagtgaagaagacggctctctgctgctgtttttaccc
ggcgtcgcggagattcgccgcgtacagtcgctgctggaaaatagcgtgtcgggcgagaca
gatctctgtcctttatatggcgcattgacgctggcggaacagcaaaaggccattctgcct
gcggagccgggtcgtcgtaaggtggtgttagccaccaatatcgctgaaaccagtctgaca
attgaaggtatccggctggtggtggacagcggccttgagcgcgtagccagctttgatgtg
aaaagcggtgtcactcggctggtgacacagcgaatcagtcaggcgtcgatggtacagcgc
gccggacgtgccgggcgcttaactcccggtatatgctggcatttatgctctcgcgaacag
gccgaacgtgcagcggcacaaagcgaagccgagatactgaatagcgatttaagcagcatc
tggctggatttattacagtggggttgtaccgatgtggcgcaattaacctggctggatacg
ctgccagcccctgcactttatgccgcacgccagctgctgcgccagctcggtattaccgat
gaacaggatcggttaaccgccgagggtcggaagatagccgcgttaggctgcgatgcccgc
ctggcgacgatgctgtatgccgcgtcacagcaaagttcagacgcgttgactaccgccgga
tgtctggcggcgatacttgaagagccaccgcgtagcggatcgattaatctggctgactgg
ctgcatcgtccactctctcattggttgcggcgggcaaaacagctgacgcgccgtttatcg
acgacgtcgggacatattgacggcggcgaagccgactggctgttggcacaggctttccct
gaccgtatcgcccggcggcgtagtcaggatgggcgctaccagcttgctaacggcagcggc
gcgatgatgtcggccgatgaagcgctgtcaggtacggagtggctgctgaccccagcgttg
ctacagaacgatcgattagtgcaaaacaagcaaagcgcagatgcgcggatcctgctggcg
ttgccgctggatattgaacggctggagcggcggttacctggattaataaatgagcgtaac
gtggtgcactgggacgaagaaaagggtactctgcgcgccagccagcgcgaccagataggt
tgcctgactctgcgaacgcgcccgttgaataagccttccgatgaggcattacagcaggcg
atgctatcctggattcgggatcagggaatacgtgcattaaactgggatgccgcggcgttg
cagctacgtgctcgtctacagtgcgcgtgtcagtggctgcctgaggttcactggccgcga
gtggatgatgatacgctgctggcaacgttggaaatctggttacagccgtcgctgtctggc
gtgcgcgatttacgtgcgttgcaccagattaatttgagcgacgcgctgctgagattgctg
gattggtcgctgcgccagcggttggatagcgcgttgcccacgcactatacggctcccggc
ggtagccgtttgcccatcgcctattatgatgataagcctccggtgctgtcggtgcggatg
caggaaatgttcggcgagcagcacagcccgctgctggcggagggacgtgtggcgctggta
ttggaacttttatcgccagcacagcgtccactacagattacgcgtgatttagcggcattc
tggcaaggcacataccgcgatgtgcaaaaagagatgaaggggcgttaccccaagcatgtc
tggccggacgatccggcgaatacggtgccgacgaggcgtaccaagaaatatcagaatcac
taa
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