Pectobacterium araliae: PEC302110_31570
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Entry
PEC302110_31570 CDS
T10257
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
parl Pectobacterium araliae
Brite
KEGG Orthology (KO) [BR:
parl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
parl03009
]
PEC302110_31570 (rlmD)
Enzymes [BR:
parl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PEC302110_31570 (rlmD)
Ribosome biogenesis [BR:
parl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PEC302110_31570 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
RrnaAD
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Cons_hypoth95
Methyltransf_4
FtsJ
Ubie_methyltran
Methyltransf_23
Methyltransf_15
Methyltransf_32
PDGF
CMAS
DOT1
Motif
Other DBs
NCBI-ProteinID:
BES86060
UniProt:
A0AAN0KCJ8
LinkDB
All DBs
Position
complement(3562805..3564154)
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AA seq
449 aa
AA seq
DB search
MAQFYSPNRRVTTRKAVPAKNLTVTVTSLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLT
EEKRQFSHAKLKRLLTLSPQRVEPPCPHFTRCGGCQQQHAEIALQQSSKTAALIRMMTRE
TGVELPAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPEL
EALLQPLRDCLSRLKAVKRLGHAELVQAENGPLLVLRHLDPLHPSDEQALRDFAQQQRVS
VYLAPDADSLTCLHGEEPVYHVAGLTLAFSPRDFIQVNDAVNQQMVAQALTWLDVQPQDR
ILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQ
QPWAAQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLA
NVAMLDMFPHTGHLESMALFLHDSGTRKA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctccaaaccggcgtgtgacgacccggaaagcagttcctgctaag
aacctcactgttacggtcacgtcacttgacccgtttggacagggcgtggcgcgtcacgaa
ggcaagacggtgtttgtcacaggtgtgctgccgggagagcaagccgaagtgcaactgacg
gaagagaagcgtcagttttcacatgccaaacttaaacgcctgctgacgctgagcccgcag
cgcgttgagccgccgtgccctcattttacccgctgtggcggttgtcagcagcagcatgca
gaaattgcgttgcagcagagcagcaaaacagcggcattgatacgcatgatgacgcgagaa
acaggcgttgaactgccagcagcctcgctcattgcgggcacaccttatgcctatcggcgg
cgtgcgcggcttgcgttatactttcaggcaaaagagcaacgattgttgatgggctaccgg
cagtcaaattctcacgatctggtggatatcaaagcctgtccggtattgcgtcccgaactt
gaagcgctgctgcaaccgctgcgcgactgtttgagccgactaaaagcggtgaagcgtctt
gggcatgcggaattggtgcaggcggagaatggtccgctgctggtgctgcggcatctcgat
ccgctgcatccatcggatgagcaggcgttgcgtgattttgcccagcagcagcgtgtctcg
gtttatctggcaccggatgccgactcgctgacgtgtctacacggcgaagagccggtctat
cacgtcgccgggctgacgctggcatttagcccgcgtgattttattcaggtcaatgacgca
gttaaccagcagatggtcgcgcaggcgctaacgtggctggatgtgcaaccgcaggataga
atattggatctgttttgcggcatgggcaatttcacgctgccgctggcacagcgtgctgcc
agcgttgtcggtgtggaaggcgtgacggcgctagtcgagaaagggcgagagaatgcccgg
cgcaatgcgctgtcgaatgtcacattttttcaccaaaatcttgaagatgatgttacgcag
cagccgtgggcggcccagggttttgataagatattacttgatccggcacgtgcaggcgca
gcaggcgtgatggagcagataaccagactggcaccgaaacgggtggtgtatgtttcctgt
aatgccacaacgctagcacgcgacagcaaagtcttactcgcagccggttaccgactggca
aatgtcgcgatgttggatatgtttccacataccggacaccttgaatcgatggcactgttt
ttgcacgactccggcacgcggaaggcgtaa
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