Pectobacterium araliae: PEC302110_36940
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Entry
PEC302110_36940 CDS
T10257
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
parl Pectobacterium araliae
Pathway
parl02020
Two-component system
parl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
parl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PEC302110_36940 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PEC302110_36940 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
parl03021
]
PEC302110_36940 (rpoN)
Transcription machinery [BR:
parl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PEC302110_36940 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
BES86597
UniProt:
A0AAN0MMP3
LinkDB
All DBs
Position
4150239..4151672
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDQHDEIESFE
KANSDSLDTGEALEQRDMPEELPLDATWDEIYSAGTPSGTGTDYRDEELPIYQGETTQTL
QDYLMWQVELTPFSDTDAAIATSIVDAVDNTGYLTVPLQDILDSIGDDDVTLEEVEAVLK
RVQRFDPVGVAARDLRDCLLVQLSQFADDTPRLTEARLIVSDHLDLLANHDFRSLIRITR
LKEEVLKEALALIQSLDPRPGQSINTGESEYVIPDVLVRKIQGIWSVELNTDSVPRLQIN
QQYAALGNSVRNDSDGQFIRSNLQEARWLIKSLESRNDTLLKVTRCIVEQQQDFFDQGEE
FMRPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLIAAENPVKPLSDSKLTALLSDQGIIVARRTVAKYRESLSIPPSNQRKQLI
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcaggcttagccagcaactggccatgactccacagctccaa
caggcgatccgcctgttgcaactgtccacgcttgaattgcaacaggagattcaactggcg
ttagaaagtaatccgttgctcgaacaaacggatcagcacgacgaaatcgagtcatttgaa
aaggcaaacagcgattcactggataccggtgaagcccttgagcaacgggatatgccggaa
gaattgccgcttgatgccacctgggatgaaatctactctgcaggcacgccgtcgggcacc
ggcaccgactatcgcgatgaagaattgccaatttatcaaggcgaaactacgcaaacactt
caggattacctgatgtggcaggttgagctgacgccattttccgacaccgacgccgctatc
gcgacctctatcgtcgatgcggtggacaacaccggttacctgaccgtaccgctacaggac
attcttgacagcatcggtgacgacgacgtgacgctggaagaagttgaagccgtactcaaa
cgcgtgcagcgcttcgatcccgttggcgtcgccgcccgcgacctgcgcgattgtctgctg
gtgcagctttcccagttcgctgacgacacgccacgcctgaccgaagctcgcctgatcgtc
agcgatcatctcgatctgttagccaaccatgatttccgcagcttgatccgcatcacgcgc
ctgaaagaagaggtgctgaaagaagctctggcgctgatccaatcactcgatccccgtcca
ggacaatcgatcaacaccggtgaatctgaatacgttatccctgacgtactggtacgtaaa
attcagggaatctggtccgttgaattgaacaccgacagcgttccccgtttgcagattaat
cagcagtatgccgcgctgggtaacagcgtgcgcaacgacagcgacggacagtttatccgc
agcaacctgcaagaagcgcgctggctcatcaaaagcctggaaagtcgcaatgacacgctg
ctgaaggtaacccgctgcatcgtcgagcagcagcaggatttcttcgatcagggtgaagaa
ttcatgaggcccatggtactggcagacatcgcgcaggcggtggatatgcatgaatccacc
atctcacgcgtgacgacacagaagttcctgcacagcccacgcggcatttttgagctaaaa
tatttcttctccagccacgttaataccgatagcggcggagaagcctcgtcaacggcaatc
cgcgcgttggtgaagaagcttattgcagcggaaaacccggtgaagccactgagcgatagc
aagctgacggcgctgctctccgatcagggcattatcgtggcgcggcgaaccgttgcaaaa
taccgagagtctttatctatcccaccatcgaatcagcgtaaacaactgatttga
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integrated database retrieval system
