Paraconexibacter antarcticus: NBH00_02325
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Entry
NBH00_02325 CDS
T08278
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
parn
Paraconexibacter antarcticus
Brite
KEGG Orthology (KO) [BR:
parn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parn03019
]
NBH00_02325 (hrpA)
Enzymes [BR:
parn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NBH00_02325 (hrpA)
Messenger RNA biogenesis [BR:
parn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NBH00_02325 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
NACHT
T2SSE
ResIII
AAA_30
ABC_tran
SLFN-g3_helicase
SRP54
AAA_24
Motif
Other DBs
NCBI-ProteinID:
UTI65054
LinkDB
All DBs
Position
463959..467726
Genome browser
AA seq
1255 aa
AA seq
DB search
MPRTISFPPDLPVSGRIDDLAAAIGKHQVVIVAGETGSGKTTQLPKLCLKLGRGIDGTIA
HTQPRRIAARSVAQRIAEELATPLGATVGYSVRFENKSSDTTLIRLMTDGLLLAEIQRDR
LLSRYDTIIVDEAHERSLNIDFLLGYLRRILPARPDLKVIITSATIDSARFSEHFGDAPV
VEVSGRTYPVEVRYRPLGADEHAPEADEDEDPADALQGHSVGDRDQSEAIADAVDELLDE
APGDILVFLSGEREIRDAADTLSGRVPSSVEILPLFARLSTAEQQRIFRRGDSKAGRRVV
LATNVAETSLTVPGIKYVIDAGTARISRYSTRLKVQRLPIEPISQASARQRAGRCGRTSD
GICIRLYSEQDFASRPEYTDPEILRTSLAAVILQMALLGLGAIEDYPFVDPPDRRQIRDG
VMLLQELGAIAPGAAEISVPRLTKDGRRLAQLPVDPRLARMVLEADRLSCAEEVIVIVAA
LSIQDPRIRPSDERGRADQLHARFKDEHSDFLTLLNLWRYLEQQQEDLSRSKFRKRCREE
FLHHLRIREWQDLVARLQQATRTTRVTLNQQPGTPEQIHRALLSGLLSHVGVRDAKRRDY
LGARGSHFRIFPGSALGRATPEWVMAAELVETSQLFARTAAKIDPRWIEPLAADLLKRTY
SEPRWDLRKAAAVATERATLYGLPVVAGRTVTYAPIDPELAREFFIQHALVEGDWETRHE
FVAENREVVDQALALEDRLRRRGLLAGDHVRAAFFEERIPEGVVSGAHFDRWWREERRRR
PGLLTYSRELLIDPAARADLDPKGFPAAWRQGNRLLRLSYRFDPGAADDGITVHVPLAEI
ADVDADEFEWLVPGLRRELVVALLRGLPKDIRRRLLPIPETAQSVLAAVRPRRERLADAL
ARELERQKGVRVEAHQLSRAGLEPHLRVAFQVETADRTIVARGPDLDVLRAQVRPTLRQE
LVAQTPELQATGLTGWSIGTLPRELRLPGEGVTVYPSLVDEGATVGVTVLDSRDAQARAM
AAGTRRLLLLNCPSPTRRVRGGLDLRAQLVLAEPVLGGIDAVLQDAVLAAVDFGVTEAGG
PAWDPETFATLRRHVAGHLEETTERVVTQVVEILELRAQIIAAVAPLVAEAHAPARADIQ
QHLARLVHRGFIVTAGAARLADLKRFVAGILQRVERLRSAAPGPDLQSMAVAQAVETEAA
AVRAAWPPGRALPPDLLELPWLLEELRVSLFAQGLGTKVAVSPKKVRRRIAELAA
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
gtgcctaggaccatctctttcccgccggacctgcccgtcagcggacgcatcgacgacctt
gctgccgctatcggcaagcaccaggtcgtcatcgtcgccggcgagacgggatccggcaag
acgacgcagctgccgaagctctgcctgaagctcggacgcggcatcgacgggacgatcgcg
cacacgcaaccccgccgcattgcggcccggtccgtcgcgcagcgcatcgcggaggagctg
gcgacgccgctcggggcgacggtcggctattcggtgcggttcgagaacaagtcgtcggac
acgacgctgatcagactcatgaccgacggactcctcctggccgagatccagcgggatcgc
ctgctcagcagatacgacaccatcatcgtcgacgaggctcacgagcggtcgctcaacatc
gacttcctgctcggctacctgcggcggatcctgccggcccggcccgacctgaaggtgatc
atcacctcggcgacgatcgacagcgcccggttctcggagcacttcggggacgcacccgtt
gtcgaggtgtcggggcgcacgtaccccgtcgaggtccgctaccgaccgctgggggccgac
gagcacgcacccgaggccgacgaggacgaggatccggccgacgcccttcagggacacagc
gtcggcgaccgcgaccagtccgaggcgatcgccgacgcagtcgacgagttgctggatgag
gcgcccggcgacatcctcgtcttcctcagcggcgagcgcgagatccgcgacgccgccgac
acgctgagcggccgcgtgccctcgtcggtcgagatcctgccgttgttcgcgcgcctctcc
accgccgaacagcagcgcatcttccggcgcggggactcgaaggcggggcggcgcgtggtc
ctcgcgacgaacgtcgccgagacctcgctgaccgtgccgggcatcaagtacgtcatcgac
gccggcaccgcacggatcagccgctactcgacccggctgaaggtccagcgcctgccgatc
gagccgatctcacaggcgtccgcgcggcagcgggccgggcgttgtggtcggacgtcagac
ggcatctgcatccggctctactccgagcaggacttcgccagccggccggagtacaccgac
ccggagatcctgcggacgagcctggccgccgtcatcctgcagatggcgctcctcggtctg
ggggcgatcgaggactacccgttcgtcgacccgcccgaccggcggcagatccgtgacggc
gtgatgctcctgcaggagcttggtgccatcgcgccgggtgccgcagagatctccgtcccg
cgcctcacgaaggacggccggcggctcgcccagctcccggtggatccgcggctcgcgcga
atggtgctcgaggccgaccgcctctcatgtgcggaggaggtcatcgtcatcgtcgccgcc
ctgtccatccaggatccccgcatccgcccgagcgacgagcgcggcagggccgatcagctc
cacgcccggttcaaggacgagcactcggacttcctgacgctcctcaacctgtggcggtat
ctcgaacagcagcaggaggacctgtcgcgctcgaagttcaggaagcggtgccgcgaggaa
tttctgcaccacctgcggattcgcgaatggcaggacctcgtcgcgcggctgcagcaggcc
acccgcacgacgagggtcaccctcaaccagcagcccggcaccccggagcagatccaccgc
gcactgctcagcgggttgctctcccacgtcggtgtccgcgacgccaagcgccgcgactac
ctaggcgcgcgcggttcgcacttccggatcttcccgggctcggcactcggacgcgcgacc
ccggaatgggtcatggcggcagagctcgtggagacctcccagctgttcgcgcgcacggcg
gccaagatcgatccgaggtggatcgagccgctcgcagccgaccttctgaagcggacctac
tccgagcctcgctgggatctccgcaaggccgccgccgtggccaccgaacgcgcgacgctc
tacggcctgccggtcgtggccgggcggaccgtcacctacgcgccgatcgatccggagctc
gcccgcgagttcttcatccagcacgcgctggtggagggcgactgggagactcgccacgag
ttcgtcgcggagaaccgcgaggtcgtcgaccaggcgctggcactcgaggaccgcctacga
cgtcgcggactgctggccggcgatcacgtccgtgcggcgttcttcgaggaacgaatcccc
gagggcgtcgtctccggggcacacttcgatcgctggtggcgcgaggagcgtcggcggcgc
cccggcctgctcacctactcgcgcgagctgctcatcgaccccgcggcccgggccgacctc
gacccgaagggcttccccgctgcctggcgccaggggaaccggctgctgcgcctcagttat
cgcttcgacccgggcgcggccgacgacggcatcaccgtccacgtcccgctcgccgagatc
gcggacgtcgacgccgacgagttcgagtggctcgtccccggcctgcgccgcgagctcgtc
gtcgcgttgctccgcggtctcccgaaagacatccggcggcgtctgctgccgatcccggag
acggcgcagtcggtgctcgccgccgtgcgaccccgccgtgagcgtctcgccgacgcgctc
gcgcgggagctcgagcgtcagaaaggtgtccgggtcgaggcccatcagctgagccgcgcc
ggcctcgagccgcacctacgtgtggcctttcaggtcgagacggccgaccgcacgatcgtg
gcccgcggaccggacctcgacgtgctgcgcgcgcaggtccgcccgacactgcgtcaggag
ctcgtggcgcagacgcccgagctgcaggcgaccggactgaccggctggtcgatcggcacg
ctgccccgtgagctgcgcctccccggggagggcgtgacggtctatccgtccctcgtcgac
gaaggcgcgacggtgggggtcaccgtcctcgattcccgtgacgcccaggcgcgggcgatg
gcggccgggacgcgccggttgctcctgctgaactgcccgtcgcccacgcggcgggttcgc
ggtggcctcgacctgcgcgcccagctcgtgctcgccgagccggtgctcggcgggatcgat
gcggtcctccaggacgcggtgcttgccgcggtcgacttcggcgtcaccgaggcgggcggt
ccggcgtgggaccctgagacgttcgcgacgcttcgccgccacgtcgcgggccacctcgag
gagacgaccgagcgggtcgtcacccaggtggtggagatcctcgagcttcgcgcccagatc
atcgccgcggtcgcgccgctcgtcgccgaggcgcatgctcccgcgcgagccgacatccag
cagcacctggcgcgcctcgtgcaccgcgggttcatcgtgacggccggcgccgctcgcctc
gcggacctcaaacgcttcgtcgccgggatcctgcagcgggtggagcggctgcgctcggcg
gcgcccgggcccgacctccagagcatggccgtggcgcaagcggtcgagacggaggccgct
gccgtccgcgccgcctggccaccgggccgtgcgctgccgcccgatctgctcgaactgccc
tggctgctcgaggaactccgcgtgagcctcttcgcgcagggcctcggaacgaaggtcgcg
gtgtcaccgaagaaggtgcggcggcgcatcgccgagctggcggcctga
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