KEGG   Paraconexibacter antarcticus: NBH00_15550
Entry
NBH00_15550       CDS       T08278                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
parn  Paraconexibacter antarcticus
Pathway
parn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:parn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NBH00_15550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:parn03019]
    NBH00_15550
Messenger RNA biogenesis [BR:parn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NBH00_15550
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: UTI62772
UniProt: A0ABY5DPQ7
LinkDB
Position
3174272..3175939
AA seq 555 aa
MSTPTLRVLPLGGLGEIGKNMTVVELDDRIIIVDVGLRFPTAEMVGIDLVLPDFSYLRDR
IDDIEAIVVTHGHEDHLGALPWILRDLKTQDIPIYGGPLTMAMARSKLDEHRLRDVECID
TKDGERYQIGPFELEMVHMTHSIPDASAVVLRNAAGTVLFTGDYKFDQTPVDGNPADIAR
LAEIGKEGVTLLCGDSTNVDRAGWSLSESVAGPHLEEVFSRCDGRIIVTCFASNIHRVQQ
VVDAAAALNRKVALIGRSMKKNTNIGKSLGHIDLPDGIQIQPREIDQFPDHKVVVVSTGS
QGEPLSALRRMAYKDHHQVQLKKGDTIVFSATPIPGNERAVNETVDRLYEMGCTVITTKD
APIHASGHGYAEEVKLMLNLTKPTYVMPFHGDHKRIQMHADLAEAVGVPAANIFKGENGK
PLQIDGKGARFVDKVQSGVIYVDGVDLGEEADAALRDRRMLAGDGIFVVVATISEQTGES
VADPEVIFRGVPYSVDEEQLIDEIRDGVDASLIQAAKDGVHDLDALQSILHDDLAALVFK
KLKRRPMVMPVVVEV
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgagcacccccacccttcgcgtcctgccgctcggcggcctgggcgagatcggcaagaac
atgacggtcgtcgagctcgacgaccgcatcatcatcgtcgacgtcggcctgcgcttcccc
accgcggagatggtcggcatcgacctcgtccttccggacttctcctacctccgggaccgc
atcgacgacatcgaggcgatcgtcgtcacccacgggcacgaggatcacctcggcgccctc
ccgtggatcctgcgcgacctcaagacgcaggacatcccgatctacggcggcccactcacc
atggcgatggcccgctcgaagctcgacgagcaccgcctccgcgacgtcgagtgcatcgac
acgaaggacggcgagcgctaccagatcggtccgttcgagctcgagatggtccacatgacc
cactcgatcccggacgcgagcgccgtcgtcctgcgcaacgccgcgggcacggtcctcttc
acgggcgactacaagttcgaccagaccccggtcgacggcaacccggccgacatcgcccgc
ctcgcggagatcggcaaggagggcgtcacgctcctctgcggcgactcgacgaacgtcgac
cgcgccggctggtcgctcagcgagtccgtggccgggccgcacctcgaggaggtcttctcg
cgctgcgacggccgcatcatcgtgacgtgcttcgcgtcgaacatccaccgcgtccagcag
gtcgtcgacgccgccgccgcgctgaaccgcaaggtcgcgctcatcggccggtcgatgaag
aagaacacgaacatcggcaagtcgctcggccacatcgacctgcccgacggcatccagatc
cagccgcgcgagatcgaccagttccccgaccacaaggtcgtcgtcgtctccaccgggtcc
cagggcgagccgctcagcgcgctgcgccggatggcctacaaggaccaccatcaggtgcag
ctgaagaagggcgacacgatcgtcttcagcgcgacgccgatccccggcaacgagcgcgcg
gtcaacgagaccgtcgaccgcctctacgagatgggctgcacggtcatcacgacgaaggac
gcgccgatccacgcctcgggccacggctacgcggaggaggtcaagctcatgctgaacctc
acgaagccgacgtacgtcatgcccttccacggcgaccacaagcgcatccagatgcacgcg
gacctcgccgaggccgtcggggtccccgcggcgaacatcttcaagggcgagaacggcaag
cccctgcagatcgacggcaaaggcgcgcggttcgtcgacaaggtccagtccggcgtcatc
tacgtcgacggcgtcgacctgggggaggaggcggacgcggccctccgcgaccggcgcatg
ctcgcgggcgacggcatcttcgtcgtcgtcgcgacgatctccgagcagacgggcgagtcg
gtcgccgacccggaggtcatcttccgcggcgtgccgtactcggtcgacgaggagcagctc
atcgacgagatccgcgacggcgtcgacgcctcgctcatccaggcggcgaaggacggggtc
cacgacctcgacgcgctgcagtcgatcctccacgacgacctcgccgcgctcgtcttcaag
aagctcaagcgccgcccgatggtcatgcccgtggtggtggaggtctga

DBGET integrated database retrieval system