Paraconexibacter antarcticus: NBH00_15550
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Entry
NBH00_15550 CDS
T08278
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
parn
Paraconexibacter antarcticus
Pathway
parn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBH00_15550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parn03019
]
NBH00_15550
Messenger RNA biogenesis [BR:
parn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NBH00_15550
BRITE hierarchy
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UTI62772
UniProt:
A0ABY5DPQ7
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Position
3174272..3175939
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AA seq
555 aa
AA seq
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MSTPTLRVLPLGGLGEIGKNMTVVELDDRIIIVDVGLRFPTAEMVGIDLVLPDFSYLRDR
IDDIEAIVVTHGHEDHLGALPWILRDLKTQDIPIYGGPLTMAMARSKLDEHRLRDVECID
TKDGERYQIGPFELEMVHMTHSIPDASAVVLRNAAGTVLFTGDYKFDQTPVDGNPADIAR
LAEIGKEGVTLLCGDSTNVDRAGWSLSESVAGPHLEEVFSRCDGRIIVTCFASNIHRVQQ
VVDAAAALNRKVALIGRSMKKNTNIGKSLGHIDLPDGIQIQPREIDQFPDHKVVVVSTGS
QGEPLSALRRMAYKDHHQVQLKKGDTIVFSATPIPGNERAVNETVDRLYEMGCTVITTKD
APIHASGHGYAEEVKLMLNLTKPTYVMPFHGDHKRIQMHADLAEAVGVPAANIFKGENGK
PLQIDGKGARFVDKVQSGVIYVDGVDLGEEADAALRDRRMLAGDGIFVVVATISEQTGES
VADPEVIFRGVPYSVDEEQLIDEIRDGVDASLIQAAKDGVHDLDALQSILHDDLAALVFK
KLKRRPMVMPVVVEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcacccccacccttcgcgtcctgccgctcggcggcctgggcgagatcggcaagaac
atgacggtcgtcgagctcgacgaccgcatcatcatcgtcgacgtcggcctgcgcttcccc
accgcggagatggtcggcatcgacctcgtccttccggacttctcctacctccgggaccgc
atcgacgacatcgaggcgatcgtcgtcacccacgggcacgaggatcacctcggcgccctc
ccgtggatcctgcgcgacctcaagacgcaggacatcccgatctacggcggcccactcacc
atggcgatggcccgctcgaagctcgacgagcaccgcctccgcgacgtcgagtgcatcgac
acgaaggacggcgagcgctaccagatcggtccgttcgagctcgagatggtccacatgacc
cactcgatcccggacgcgagcgccgtcgtcctgcgcaacgccgcgggcacggtcctcttc
acgggcgactacaagttcgaccagaccccggtcgacggcaacccggccgacatcgcccgc
ctcgcggagatcggcaaggagggcgtcacgctcctctgcggcgactcgacgaacgtcgac
cgcgccggctggtcgctcagcgagtccgtggccgggccgcacctcgaggaggtcttctcg
cgctgcgacggccgcatcatcgtgacgtgcttcgcgtcgaacatccaccgcgtccagcag
gtcgtcgacgccgccgccgcgctgaaccgcaaggtcgcgctcatcggccggtcgatgaag
aagaacacgaacatcggcaagtcgctcggccacatcgacctgcccgacggcatccagatc
cagccgcgcgagatcgaccagttccccgaccacaaggtcgtcgtcgtctccaccgggtcc
cagggcgagccgctcagcgcgctgcgccggatggcctacaaggaccaccatcaggtgcag
ctgaagaagggcgacacgatcgtcttcagcgcgacgccgatccccggcaacgagcgcgcg
gtcaacgagaccgtcgaccgcctctacgagatgggctgcacggtcatcacgacgaaggac
gcgccgatccacgcctcgggccacggctacgcggaggaggtcaagctcatgctgaacctc
acgaagccgacgtacgtcatgcccttccacggcgaccacaagcgcatccagatgcacgcg
gacctcgccgaggccgtcggggtccccgcggcgaacatcttcaagggcgagaacggcaag
cccctgcagatcgacggcaaaggcgcgcggttcgtcgacaaggtccagtccggcgtcatc
tacgtcgacggcgtcgacctgggggaggaggcggacgcggccctccgcgaccggcgcatg
ctcgcgggcgacggcatcttcgtcgtcgtcgcgacgatctccgagcagacgggcgagtcg
gtcgccgacccggaggtcatcttccgcggcgtgccgtactcggtcgacgaggagcagctc
atcgacgagatccgcgacggcgtcgacgcctcgctcatccaggcggcgaaggacggggtc
cacgacctcgacgcgctgcagtcgatcctccacgacgacctcgccgcgctcgtcttcaag
aagctcaagcgccgcccgatggtcatgcccgtggtggtggaggtctga
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