Paracoccus tegillarcae: CUV01_00335
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Entry
CUV01_00335 CDS
T05237
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paro
Paracoccus tegillarcae
Pathway
paro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CUV01_00335 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paro03400
]
CUV01_00335 (mfd)
Enzymes [BR:
paro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUV01_00335 (mfd)
DNA repair and recombination proteins [BR:
paro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CUV01_00335 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_30
RecG_dom3_C
UB2H
AAA_16
AAA_19
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AUH32052
UniProt:
A0A2K9EVI1
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All DBs
Position
complement(62419..65856)
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AA seq
1145 aa
AA seq
DB search
MSEQITLSGAPEGHDAALIARELTRGTPVIHIARDDRRMAAMREALAFHAPGAVAVDFPA
WDTTPYDRISPAGGVQAARMATLAALAQGAIKGPFVLLTTLNAVLQRLPQRDLLKSASFS
ARVGDRIDEEALRGFLVRMGFVQSPTVTEPGDYAIRGGIIDIFSPGATGPVRLDLFGDVL
DGARRFDPVSQRTTETLKRVELAPMSEVILDDAAITRFRQNYRHAYGGGTNDPLYEAVSA
GRKQAGVEHWLPWFHDKMESIFDYLPGASVMLDDQISQVEDARRGMIAEQYQARRDALAA
KGRADTVYRPVPPDEMFPARDEWLRWLAAHRVIQLRVLPAPPGPGVLDGGGRIGRNFAPE
RQADGINLFAALADHLRSLRKNGRVVIASFSDGARERLAGLIADEGIEGARDIADLRDLP
DQPGAIGLAVWPLEQGYVAPGLAVISEQDVLGDRLIRGARKRRRAEDFLKDTTSLTPGDL
VVHVEHGIGRYTGLETITANKVPHDCVALEYAGGDRLFLPVENIELLTRYGHEEGLLDKL
GGGAWQARKARLKERIKLIADKLMRIAAERLLRPAPVLEPDHHDWEAFSARFPYSETDDQ
ATAIEDVAGDLAIGRPMDRLVVGDVGFGKTEVAMRAAFIAASQGQQVAVIAPTTLLARQH
HKTFAERFRGTPITVRPLSRFVAAKDAAATRAGLADGSVDIVVGTHAVLAKAVRFKQLGL
LIVDEEQHFGVAHKERLKDMRSDIHVLTLTATPIPRTLQMSLTGVRDLSIIGTPPIDRLA
IRTYVSEFDSVTIREALLREKYRGGQSFFVVPRISDLPDVEHWLTENVPEVRYLVAHGQM
AAGDLDSRMNDFYDGGHDVLVATSIVESGLDIPTANTMVVWRSDMFGLAQLYQIRGRVGR
SKTRAYCYLTTKPRAPLTPQAMRRLKFLGSIDSLGAGFNLASQDMDLRGAGNLLGEEQSG
HIKEVGFELYQAMLEETIAKLKSGEIEGTPEDEWAPQLNLGVPVTIPESYIPDLDVRLGL
YRRLAELTTKVELEGFAAELIDRFGKLPREVSTLMNVIRIKARAKQANISRLDAGPRGAT
VQFHGDKYPNPAGLVEFLTEQRGQAKVDGNKIIIRRDWTSDADRIKGAYGIARDLAAKAK
VTIQT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacagatcaccctttccggcgcccccgagggccatgatgccgccctgatcgcc
cgcgaattgacgcgcggcacgcctgtcatccacatcgcacgcgacgaccgacggatggcg
gcgatgcgcgaggcgctggcctttcacgcgcccggcgcggttgcggtagacttcccggcc
tgggatacgacgccctatgaccgcatctcgcctgcgggcggcgtgcaggccgcaaggatg
gccacgctggcggcgctggcgcagggggcgatcaagggaccgttcgtgctgctgacaacg
ctgaacgcggtgctgcaacgcctgccgcaacgcgatcttttgaaaagcgccagctttagc
gcccgtgtgggcgaccgcatcgacgaagaggccctgcgcgggtttctggtgcgcatgggc
tttgtgcaatcgcccaccgtaacggaacccggagattacgccattcgcggcggcatcatc
gatattttctcaccgggtgcgaccggaccggtgcggctggatttgttcggcgatgtgctg
gacggtgcgcgccggttcgatccggtcagccagcgcacgaccgagacgctcaagcgggtc
gaactggcgcccatgtccgaggtcattctggacgatgcggcgatcacccggtttcgccag
aactaccgccatgcctatggtggcggcaccaatgatccgctgtatgaggccgtcagtgcc
gggcgcaagcaggctggtgtggaacactggctgccctggttccacgacaagatggaaagc
atcttcgactatctgccgggcgcttcggtgatgctggacgatcagatcagccaggtcgag
gatgcacggcgcggcatgatcgcggaacagtatcaggcccgccgcgacgcgctggccgcc
aaggggcgtgccgataccgtttaccgcccggtaccgcccgatgagatgtttcccgcgcgc
gacgaatggctgcgctggctggccgcgcatcgggtgatccagttgcgcgtgctgcccgcc
ccgccggggccgggggttctggacggcggcgggcgcatcgggcggaactttgcacccgaa
cgtcaggccgacggcatcaatctgttcgccgccctggccgatcacctgcgcagcctgcgc
aagaacgggcgcgtcgttatcgccagcttttctgatggtgcgcgcgaacgtctggcaggc
ctgatcgcggatgaggggatcgagggcgccagggacatcgccgacctgcgcgatctgccc
gatcaacccggcgcaatcgggctggcggtctggccgctggaacaaggctatgtcgcgccg
ggactggccgttatttcggaacaggatgtattgggcgaccggctgatccggggcgccaga
aaacgccgccgggccgaggattttctgaaggacaccaccagcctgacgcccggcgatctg
gtcgtacatgtcgaacatgggatcgggcgttataccgggctggaaacgattaccgccaac
aaggtgccgcatgattgcgtggcgctggaatatgcgggcggggatcggctgtttctgccg
gtcgagaatatcgaactgctgacccgctatggccacgaagaaggcctgctggacaagctg
ggcggcggcgcgtggcaggcccgcaaggcgcggctgaaagaacgcatcaagctgatcgcc
gacaagctgatgcgcatcgctgccgaacgtctgctgcgtccggcgccggtgctggaaccc
gatcatcacgattgggaggccttttcggcccgcttcccctatagcgaaaccgacgatcag
gcgacggcgatcgaggacgtggccggcgatctggccatcggtcgcccgatggaccggctg
gtcgtgggcgatgtgggctttggcaagaccgaggttgccatgcgcgcggcctttatcgcg
gccagtcagggccagcaggtcgccgtcatcgcgccgaccacgctgctggcgcgacagcac
cacaagacattcgccgagcgttttcgcggcacacccatcaccgtgcgtccgctgtcgcgg
ttcgtggctgccaaggatgctgcggcaacgcgcgcggggcttgccgatggcagcgtcgat
atcgtcgtgggcacccatgcggtgctggccaaggcagtgcgcttcaagcagcttggtctg
ctgatcgtggacgaggagcagcatttcggcgtcgcccacaaggaacggctcaaggatatg
cgcagcgatatccacgtactgaccctgaccgccaccccgatcccgcgcaccttgcagatg
tcgctgaccggggtgcgcgatctgtcgatcattggcacgccacccatcgaccgcctggcg
atccgcacctatgtcagcgaattcgacagcgtcaccatccgcgaggcgctgctgcgcgag
aaatatcgcggcgggcagtcgttctttgtggtgccgcggatctcggacctgcccgatgtc
gagcattggctgaccgagaacgtacccgaggtcaggtatctggtcgcccatggccagatg
gcggcgggcgatctggatagccggatgaacgatttctatgatggcggccatgacgtgctg
gtcgcgacctccatcgttgaatcgggcctcgatattccgacggcgaataccatggtcgtc
tggcgctcggatatgttcgggctggcgcagctataccagatccggggtcgtgtggggcgc
tccaagacgcgcgcctattgctacctgaccaccaaaccgcgcgcgccgctgacgcctcag
gcgatgcggcggttgaaatttctgggctccatcgacagccttggcgcaggcttcaatctg
gcctcgcaggatatggatctgcgcggcgccggcaatctgctgggcgaggaacagtcgggt
catatcaaagaggtcggctttgaactgtatcaggcgatgctggaggaaacgatcgccaag
ctgaagtcgggcgagatcgagggcacgcccgaggatgaatgggcgccgcagctgaacctt
ggcgtgccggttaccattccggaaagttatatccccgatctggacgtgcggctcggcctg
tatcgccgtctggccgaactgaccacaaaggtcgagctggagggctttgccgccgagttg
atcgaccgtttcggcaagctgccgcgagaggtttcgaccctgatgaacgtgatccgtatc
aaggcgcgggcgaaacaggccaatatctcgcggctcgatgccgggccgcgcggggcgacg
gttcagttccacggcgacaaatatcccaaccccgccggtctggtcgaattcctgaccgaa
cagcgcgggcaagccaaggtcgacggcaacaagatcatcatccgccgcgactggaccagc
gacgccgaccggatcaagggcgcctacggcatcgcgcgcgatctggcggccaaggccaag
gtaactatacagacgtag
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