Parasphingopyxis sp. CP4: HFP51_04200
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Entry
HFP51_04200 CDS
T09836
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
parp
Parasphingopyxis sp. CP4
Brite
KEGG Orthology (KO) [BR:
parp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
parp03016
]
HFP51_04200 (rnd)
Enzymes [BR:
parp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HFP51_04200 (rnd)
Transfer RNA biogenesis [BR:
parp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HFP51_04200 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QLC21454
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All DBs
Position
complement(884481..885662)
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AA seq
393 aa
AA seq
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MQIHPLITDSDALADLCARLSAGDFVAVDTEFMRESTYWPDLCLIQIGNAEEAAAVDPKA
DDIDLAPLLDMLVDNEDVLKVFHAGGQDVEIVYNLTNKTPHPIFDTQIAAMALGLGEQIG
YSNLVDALLGHSLDKGARFTDWARRPLDKRQLDYAIGDVTHLAELFPKMLDRLRETGRGA
WINAEMERLADPANYANEPSDSWKRVRIQSRKADVLGRLKAIAAWRECEAQDKNLPRGRL
LRDEALADIASHPPKNQKALAKIRGLPSSWASNDIGARLMQVVQHAEPLPEDELPSRRNR
KPGLGKEGALVADLLKLLLKIRSREIGVASRLIAKADELEQLAAGVREDIRLLDGWRFEE
FGRDALDLVEGRVAFAVRDGKLKVTHTEEEDAE
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcagatccacccgctgattaccgatagcgatgcgcttgctgatctttgcgcacggctg
tccgccggagactttgtcgcggtcgatactgagtttatgcgcgaaagcacctattggccg
gacttgtgcctgatccagatcggaaatgccgaggaagcagcggccgtcgaccccaaggcc
gatgatatcgatctggcgccgcttctcgatatgctggtcgacaatgaagatgtcctcaag
gtttttcatgccggcgggcaggatgtggagatcgtctacaatctcaccaacaagacaccg
cacccgatcttcgatacccagatcgccgccatggcgctcgggttgggagaacagattggt
tattcgaacctggtcgatgcattgctcggccatagcctcgataagggcgcgcgctttacc
gattgggcgcgccgaccgctcgataaacgccagctcgattacgcgattggcgacgtcact
catttggcagaattgtttcccaagatgctcgatcgcctgagagaaactgggcgcggtgca
tggatcaatgccgagatggaacgactggccgacccggcaaattatgcaaatgagcccagc
gatagttggaagcgcgttcgcatacagagccggaaagccgacgtgctgggccggctgaaa
gcaattgcagcctggcgtgaatgtgaagcgcaggacaagaatttaccgaggggtcggctc
ttacgcgatgaggcgttggccgatatcgcatcgcatccaccgaaaaatcagaaggcactc
gccaagattcgtggtttgccatcgagctgggcttccaacgatatcggcgcgcgcctgatg
caggttgttcagcacgccgaaccgttgccggaagatgaactgccgtcgcggcgaaatcgt
aagcccggtcttggcaaggaaggggcgttggtcgcagatttgcttaagctgctcttgaag
atcagatcgcgggaaatcggcgtggcttcgcggttgattgcaaaggctgacgagcttgag
cagctggctgctggcgtgcgtgaagacatacgattgctggatggatggcgctttgaagaa
ttcggccgtgacgcgttagaccttgtcgaaggccgcgttgcatttgccgtccgcgacgga
aaattgaaggtaacgcatacggaggaagaagatgcggaatag
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