Parasphingopyxis sp. CP4: HFP51_04760
Help
Entry
HFP51_04760 CDS
T09836
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
parp
Parasphingopyxis sp. CP4
Pathway
parp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
parp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HFP51_04760 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
parp03021
]
HFP51_04760 (rpoD)
Transcription machinery [BR:
parp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HFP51_04760 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
STX6_10_61_N
PIP49_N
Motif
Other DBs
NCBI-ProteinID:
QLC21549
LinkDB
All DBs
Position
995375..997402
Genome browser
AA seq
675 aa
AA seq
DB search
MAKAKTAEQAEGDAPVIDLNQASIKKLITKAKKRGYLTYDELNEALPQDQMSSEQIEDVM
SALSEMGVNIVENEDAGEEEAAEAKDAPKAVDGPDKKVVEAPAKKTTGDRTDDPVRMYLR
EMGAVELLSREGEIAIAKRIEAGRDMMIMGLCESPITFNAIIEWSNALNDEEMQLREILD
LEAMLTKGPSLEEVENDDDSGEISEKTAGVSIKDDDDDYDDDDEEDSDGDSEDGEEEEDP
VAKRRREEEEEDDNQLSLAQMEEALKPDALERFAKITKLYRTFSKIQERRLDALGSSKDF
PKAQETRYHNLREELTAEVESVQFHATKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVA
RRSFLDEYMGRELEDGWLKKVSKIDAKWKKFADKEGEAVDRIRTEISEISQATGTSLKEF
RRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREA
TPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQS
NLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKL
KHPSRSRKMRSFLDQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagcaaaaactgcggagcaggccgaaggcgatgctccggtcatcgatctcaat
caggcttctatcaagaagctgatcaccaaggccaagaagcgtggctatctgacctatgac
gagctgaatgaggctctgccacaggatcagatgtcatccgagcaaatcgaagatgtgatg
tcggccctgtccgaaatgggcgtcaacatcgtcgaaaacgaagatgcgggcgaagaagag
gccgccgaagccaaggatgcaccaaaagctgtagacggccccgacaagaaagttgtcgag
gcgccggccaagaaaacgacgggtgaccgcaccgacgatcccgtgcgtatgtatctgcgc
gaaatgggcgcggtcgagttgctcagccgcgaaggcgagatcgcgattgccaagcgtatc
gaagccgggcgtgacatgatgatcatgggcctgtgcgaaagcccgatcacctttaacgcg
atcatcgaatggtcgaacgcactcaacgacgaagaaatgcagttgcgcgaaatcctcgac
ctcgaagccatgctgaccaaaggtccatcgctcgaagaagtcgaaaatgacgatgatagc
ggtgaaatctcggaaaaaaccgccggcgtctcgatcaaagacgatgacgacgattatgat
gatgatgacgaggaagattctgacggcgatagcgaagatggcgaagaggaagaggatccc
gtcgccaaacgccgtcgtgaggaagaggaagaagacgataaccagctttctctcgcccag
atggaagaggctctgaagcctgatgcgcttgagcggttcgccaagatcaccaagctctat
cgcaccttctccaagatccaggaacgccggctagatgcgctgggaagcagcaaggacttc
cccaaggcgcaggaaacccgctaccataatcttcgcgaagagctgaccgccgaagttgaa
agtgtacagtttcacgcgaccaagatcgaatatctggtcgatcagctttatagctacaac
cggcgcctgaccgcgcttggcggccagatgctgcgccttgccgagcggcacaaagtcgcc
cgtagatccttcctcgatgaatatatgggtcgcgagctggaagatggctggctgaagaag
gtgtcgaagatcgacgcgaaatggaaaaagttcgccgacaaggaaggcgaagcggtcgat
cgtattcgcactgaaatttcggagatcagccaggccaccggcacatcgctcaaggaattc
cgccggatcgtgaacatggtccagaaggcagagcgggaagcgcggatcgcaaagaaagaa
atggtcgaggccaatctgcgcctcgtgatttcgatcgcgaagaaatacaccaatcgcggc
ctgcaattcctggatctgatccaggaaggaaatatcggcctcatgaaagccgtcgacaaa
ttcgagtatcgacgcggctacaagttcagcacctatgccacctggtggatccgacaggcg
atcacccgatcaattgccgaccaggcacgtacgatccgtatcccggttcacatgatcgag
acgatcaacaagctggtccgcacctcgcgccaattcctccacgagcagggccgcgaagct
acgcccgaagaaatggcggaacggctttccatgccgctcgaaaaagtgcgcaaggtgatg
aagatcgccaaggagccgatcagcctcgaaacgccgattggcgatgaggaagattcgcat
ctcggcgatttcatcgaggacaagaatgcgatcatcccggtcgacgctgcgatccagtcg
aacctcaaggaaaccgtgacccgggttctggcctcgcttacgccgcgcgaagaacgcgtg
ctgcgcatgcgctttggcatcggcatgaacaccgatcacacgcttgaggaagtcggccag
cagttcagcgtgacgcgcgaacgtatccggcagatcgaagcaaaagcgctgcgcaagctc
aaacatccgagccgcagccgcaaaatgcggagcttcctcgaccagtag
DBGET
integrated database retrieval system
