Parasphingopyxis sp. CP4: HFP51_04885
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Entry
HFP51_04885 CDS
T09836
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
parp
Parasphingopyxis sp. CP4
Brite
KEGG Orthology (KO) [BR:
parp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parp03400
]
HFP51_04885 (addB)
Enzymes [BR:
parp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HFP51_04885 (addB)
DNA repair and recombination proteins [BR:
parp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
HFP51_04885 (addB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QLC21570
LinkDB
All DBs
Position
complement(1028731..1031709)
Genome browser
AA seq
992 aa
AA seq
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MAKAVHPNIFTIPPHRAFSDALAAGLLRMHGKDPLGLAGGIILVPTNRTARAIQDAFVRR
SSAGLVLPRLVPIGDPEIVETLGSALDPIGICADIPPAVAPLERTMRLATIVQRTRERLG
EPVDAGEAVRLARDLATTLDQLLIEKVNPEALADGVEGELAEHWKVSLDQLEMILTEWPA
ELLKLGKIDMAERRNRLLDHMAERWRISPPDGFVVAAGIASTSPSVAQVLRTVARMEQGS
VVLPGLDTVMPDCEWEALGPHDRDPQSGFRKRSIETHPQFALKLLLDRVGVARDEVRPWR
WGGGHDSPAVRTRAISNVMAPANFTGKWNDLPPRERRLSGVRGLELATPREEAQVIAIAM
REVLETPGRTAALVTPDRALARRVSAHLRRWGVEADDSAGRPLSEQPPGTLLVALATAAA
DRFAPISLLALLKHPLVQAGDGRGTWLNDVRQLDIALRGPRPRAGLEGVSEHLRSMTAQA
RDREREALLSVQRWWDDTADLLRPLQGAAQASATLSALIAAIRDAASRLAGDVVWSGPTG
REAARFIADCEMQSALGPAAAEISDMAPLLTHLMGDIAVRPPQGGHPRLSIWGVLEARLQ
QADLMILGGLNEGIWPNLPAPDPWLAPRLRAELELPGLERRIGLAAHDFASALGGRQVLV
TRARRDASAPAIASRFWLRLEAMTGGLTRAPRFKAWGTSIDHADHQTQSAARPAPAPPMA
DRPKQISVTKVDRLKADPFAFYAQTMLRLSALDPLDSDPSPAWRGSAVHQILEDWFREDD
CDPDKLIARAEALLDASDAHPLMRAMWRPRLTEPIRWIGERVRAQIAAGRIPVAAEADGK
TEISGVVLTGKVDRIDTLPDSSLAIVDYKTGQPPSPAAVEAGFAMQLGLLGLLADRGAFA
GIDGSAALFEYWSLGKDGDGFGYVKEPFRKRGDAEITAENFVAHAASVFADAAELWLIGD
EPFTAKLHPEYAPYGDYDQLMRLQEWYGRSDG
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggccgtccacccaaacatttttacaatcccgccccatcgggccttttcggac
gcgctcgcggccggccttttgcggatgcatgggaaagatcccctcgggttagcgggcggc
atcattctggtaccaaccaatcgcacagcacgtgcgattcaggatgcctttgttcgccgg
tcgtcggctggattggtattgccccgtcttgtaccaatcggcgatccggaaattgtcgag
acattgggcagcgcgctcgatcctatcggcatctgtgctgatatcccgccggcagtcgcg
ccgcttgaacggaccatgcggcttgcaacaattgttcagcgaacccgcgaaagattgggc
gagcccgttgacgctggcgaagcggttcggttggcgcgcgatctagcgacgacgctcgat
cagctgttgatcgaaaaagtgaatcccgaggcattggccgatggcgtcgagggagagctt
gccgaacactggaaagtctcgcttgaccagctcgagatgatattgaccgaatggccggcc
gaactactcaagcttggtaagatcgacatggccgaacggcgtaatcgactactcgatcat
atggcggagcgttggcggattagcccgcctgatggatttgtcgttgcggctggtattgcg
tcaacgtcaccgtctgttgcccaagtcctgcgtactgttgcccgaatggagcagggtagc
gttgtgctgccgggtttagacacagtgatgccggactgtgaatgggaggcactgggacct
catgaccgtgatccacagtccggcttcagaaaacgttcgattgagacccatccgcaattc
gcgctaaaactgttgctggatcgcgttggagtagcgcgtgacgaagttaggccttggcgt
tggggcggtggacatgactctcccgctgttcggacacgcgcgatcagcaatgtgatggcg
cccgcaaatttcaccggcaaatggaatgatcttccacctcgcgaacgtcgactttcaggg
gtccgagggctggaattggctaccccgcgcgaagaagcgcaagtcattgcaattgcgatg
cgagaggtgcttgagacgcccgggcgcacggccgcactggtcacgcctgatcgtgctttg
gctcgaagagtatcagcccacttgcgccgctggggagtcgaggcagatgattccgccggg
cgtcccttgtcggagcaaccgcctggaacattactagttgcgctggcaacggccgcggcc
gaccgatttgctcccatttcactgctggccttgttgaagcatccccttgttcaggccgga
gacggccgcggcacatggctcaacgatgtgcggcaacttgatatagctttgcgaggtcct
cgaccccgggcagggcttgaaggcgtcagcgagcatcttcgatccatgaccgcccaggcg
cgcgatcgagagcgcgaagcgttattgtcagttcagcgatggtgggacgacacagctgat
ctgctgcgcccgctgcaaggtgcagcacaagccagcgcgacattgtccgcgctcattgcc
gcaatacgcgatgccgcaagcagactggctggagatgtcgtttggtctggcccaaccggg
cgcgaagccgcgcggtttattgccgattgtgagatgcaatccgctcttggtccggcagct
gcggagatttccgatatggcaccgctgctgacccacttgatgggtgatatcgcagtccgc
ccgccacagggtggtcatccgcgcctttccatctggggggttctcgaagcgcggctgcag
caggcggatttaatgatccttggaggcttgaacgaaggcatttggcccaatcttccggca
ccagacccctggctcgctccgcgcttacgcgctgagctggaactgccgggcctggaacgg
cgtatcgggttagctgcccatgattttgccagtgccttgggtggtcgtcaggttttagtg
acgcgggcgcgcagggatgcgagcgcacccgcaattgcctcgcgcttctggttgcgcctt
gaagccatgacaggaggcctaacgcgcgctccgcgattcaaggcatggggcacatctatt
gatcatgccgatcaccagacacaatcggctgcgcggccggctcccgctccacccatggct
gaccgtccgaagcagatatcagtcaccaaggttgatcggcttaaggccgaccccttcgct
ttctacgcgcagaccatgttgcgactgtccgcgctcgatccgctcgattcagatccgagc
cctgcatggcgggggtcagctgtgcatcagatattggaagactggttccgcgaagatgat
tgcgacccggacaagttaatagcgcgggcggaagcgcttctcgatgcgagcgatgcgcat
ccattgatgcgcgccatgtggcgaccgcgactgaccgaaccgatccgctggattggtgag
cgggtccgggctcagatagcagcgggtcgaattcccgtggccgcggaggccgatggcaaa
accgagatttccggcgttgtgctgaccggaaaagtcgatcgcatcgacactctgccagat
agcagccttgcgatagttgactataaaaccggccagcctccgagcccagcagccgtcgaa
gcgggcttcgcgatgcagcttggcttgctgggactattggcagatcgcggtgcgtttgca
gggatcgatggcagcgccgctctctttgagtactggtcccttggaaaagatggcgatggc
tttggttatgtcaaagaaccatttcgtaaacgcggtgacgctgagatcaccgccgagaac
ttcgtcgcacatgcagcctcggtgttcgccgatgctgccgagctgtggttgatcggtgac
gagcctttcaccgcaaaactccatcccgaatatgcgccctatggtgattatgatcagctg
atgcggttgcaagaatggtatgggcgcagtgatgggtaa
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