Parasphingopyxis sp. CP4: HFP51_05335
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Entry
HFP51_05335 CDS
T09836
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
parp
Parasphingopyxis sp. CP4
Pathway
parp03030
DNA replication
parp03430
Mismatch repair
parp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
parp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HFP51_05335 (dnaE)
03430 Mismatch repair
HFP51_05335 (dnaE)
03440 Homologous recombination
HFP51_05335 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parp03032
]
HFP51_05335 (dnaE)
03400 DNA repair and recombination proteins [BR:
parp03400
]
HFP51_05335 (dnaE)
Enzymes [BR:
parp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HFP51_05335 (dnaE)
DNA replication proteins [BR:
parp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HFP51_05335 (dnaE)
DNA repair and recombination proteins [BR:
parp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HFP51_05335 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
QLC21649
LinkDB
All DBs
Position
complement(1111441..1114971)
Genome browser
AA seq
1176 aa
AA seq
DB search
MAAASFVPLRIFSAYTMLEGAIQPDEIAARARELGFPAAALVDRNGLYAAMPFCAAAFGK
GVQPIIGTLLAVSRPDRAEGEDPIIDWLPLLAQDETGYENLCALVSEAHLDRPLEEAPHV
PFAALQGRTDGVIALTGGSEGALARLFEAEQDEAAQDYADQLVALFPDRLYVEISRRGDP
IEMASEDALIDLAYARDLPLVATNPAFFQREDFHSAHDAMLCIADSNYVESDDRRQSPEE
GWLVPQDAMEDRFQDLPEALANTVVIAQRCAFAAPQRDPILPSVAGDLEGESAQLREDAR
AGLEERLVAIHGDKLTDEIRQPYLERLTYELDIIIEMGFPGYFLIVADFIKWAKGEGIPV
GPGRGSGAGSVVAWGLTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYV
QQKYGRDQVAQIITFGTMKSRAVLRDVGRVLQMPYGQVDRLTKMVPNHPTDPWTLERALN
GVAEFETEYKTDADVKKLVDLAMKLEGLPRHSSTHAAGVVIGDRRLDQLVPLYRDPRSDI
PVTQFDMKNVEKAGLVKFDFLGLKTLSVLKKAVQLLAKRGITVDLDRLGWDDEQVYELLQ
SGNTVGVFQLESEGMRRTLAAVKPTCFEDIIALVSLYRPGPMDNIPMFGARKNGLEPIEY
PHPELEPILKETYGIFVYQEQVMEAAKSLAGYSLGDADLLRRAMGKKIQAEMDAQRERFV
QGCGENGTDAAKANELFDLIAKFAGYGFNKSHAAAYALIAYQTAWLKTHYPHEFFAASMC
YDMGNTDKLGIFLEDIRRTPDANSGEKIKCLPPCVNASEALFSVEEDGAGHAVRYALAAL
KGVGQKAMEQLVVERDTEGQFETLDDFAARVDPHLLNKRQLESLAGAGAFDGLEDNRPAV
FAACETILAIASSAADARETGQGGLFADGGEADIAHIRLAENMHWPLAERMAQEKEAFGF
YFSGHPVDNYRHLADAFGAQSYGELCDMPAPAAGGRVGAVMAGMAENVRKRTSRRGNPFV
TATLSDSSGQFFASAFDEGPRLALEDAAENSSCGLLHVELDWQPGEEMPRVTVRQFQPFD
ALANSKRMMLTVKVAEPAALETLAELLGENGDGRGTVVLEAAIGDGGSARVVLGRNFQLD
PERADAIGQLPAVIEARLSADAGPIAEEPPKLALVS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcatcctttgtccctctgcgaattttttccgcctacacaatgttggaaggc
gcgatccagccggacgaaattgccgcgcgcgctcgcgaacttggtttccctgcggctgcc
ctggtcgatcgcaatggtctctatgcggccatgcccttttgcgccgcggcctttggaaag
ggcgtgcagccaataatcgggaccttgcttgcggtctccagacccgatcgcgccgaggga
gaggacccgatcatcgattggctgcctctgctggctcaggatgagacggggtatgaaaat
ctctgcgcgctcgtatccgaagcgcatctggatcgtccgctcgaagaagcgccgcatgtg
ccgttcgctgcgctgcaagggcgcaccgacggtgtaatcgctttgaccggcggaagcgaa
ggggcgctcgcgcgcttgttcgaggcggaacaggatgaggccgcccaagactatgcagac
cagctggtcgcgctgtttccggatcggctctatgttgaaatcagccgccgtggcgatccg
atcgaaatggccagcgaggacgcgttgatcgatcttgcctatgcgcgtgacttgccgttg
gttgcgaccaacccggctttcttccagcgcgaggacttccacagcgcacacgacgcgatg
ctctgcattgctgacagcaattatgtcgaaagcgatgatcgccgccagagcccggaagaa
ggctggctcgtcccgcaagatgcaatggaagatcggtttcaggatttgcccgaagcgctc
gccaacacggtcgtcattgcacaacgctgcgcctttgctgcgccgcagcgcgatccgatc
ttgccgagcgttgccggggacctggaaggggaatccgcgcagctccgcgaagatgcgcgc
gccggacttgaggagcgcctggttgcgatccatggcgacaagctgaccgacgaaattcgc
caaccttatctcgaacgcctgacctatgagcttgatatcattatcgagatgggctttccg
ggctatttcctgatcgttgctgatttcatcaaatgggcaaagggtgaggggatacctgtc
gggccgggccggggatccggggcaggctcggtggtcgcctgggggctgacgatcacggat
ctcgatccgcttcagctggggctgctgttcgagcgtttccttaatcccgaacgcgtatcg
atgcctgactttgacatcgatttctgcgaaacgcggcgtggcgaagtgatccgttacgtc
cagcagaaatatggccgcgatcaggtcgcccagatcatcacctttggaacaatgaaatcg
cgcgccgtgctgcgcgatgtcgggcgcgtcctgcagatgccgtacggccaggtcgatcgg
ctgaccaagatggtaccgaaccatccgaccgatccctggactctcgaacgggcactcaac
ggcgtcgccgagttcgagaccgaatataaaaccgatgccgatgtgaagaagctcgtcgat
ctggcgatgaagcttgaagggttaccgcggcacagctccactcatgccgccggcgtggtg
atcggtgatcggcggcttgaccaactcgtgccgctctatcgcgatccgcgctccgatatc
ccggtcacccagttcgatatgaagaatgttgagaaggcgggtctggtcaaattcgatttt
cttggactgaagacgctgtcggtcctgaagaaggccgtgcagctgctcgccaagcgcggg
attacggtcgatctggatcggctcggttgggatgatgagcaagtctatgagctgctccaa
agtggcaatactgttggtgtgttccagctggaatccgaaggcatgcggcgcacgctggct
gcggtgaagccaacctgttttgaagatatcatcgcgctcgtctcgctctatcggccgggt
ccgatggacaatattccgatgttcggtgcccgcaagaacgggctcgaaccgatcgaatat
ccgcatcccgagctcgagccgatcctcaaggaaacctacgggatcttcgtctatcaggaa
caggtgatggaggcggcgaaatcgctggcgggatactcgctcggtgatgccgatctgttg
cgccgcgccatgggcaagaagatccaggcggaaatggacgctcagcgcgaacgctttgtg
cagggttgtggagaaaatgggacggacgcggccaaggccaatgagctgttcgatttgatc
gccaaatttgctggctatggattcaacaagagccatgctgcggcctatgccctgatcgcc
tatcagacagcttggctcaaaacccattatccgcatgaattctttgccgcatccatgtgt
tacgacatgggtaataccgacaagctgggtatcttccttgaggatatccgccggacgcca
gacgcgaatagcggtgagaagatcaaatgtctgccaccttgcgtgaatgcgagcgaggca
ttgttctcggtcgaagaagacggcgcgggacatgccgtccgctatgcgttggcggcgctc
aagggcgtaggccagaaggcgatggaacagctcgtcgtcgagcgcgatacggaagggcag
ttcgagaccctcgatgattttgcagcgcgcgtcgacccgcatctcctcaacaagcgccag
ctggaaagcctggccggcgctggagcctttgacggattggaagacaaccggcccgccgtc
tttgccgcttgcgagacgatcctggcgatcgcatcgagcgcggctgatgcgcgcgagaca
ggacagggcgggctgtttgccgatggcggcgaggcagacatcgcgcatattcgactggcg
gaaaacatgcattggccgctcgccgaacgcatggcgcaggaaaaggaagcgtttggcttc
tatttctccggccatccggtcgataattacaggcatcttgccgatgcctttggcgcgcaa
agctatggcgagctctgcgacatgccggctcctgcggcaggtgggcgcgtcggcgcggtg
atggcgggcatggccgaaaatgtccgcaagcgaacctcgcggcgcgggaatccctttgtc
accgcgacactgtcggattcatccggtcagttttttgcgagcgcctttgatgaaggcccc
cgcctcgccttggaagatgctgcggaaaacagcagctgtggcctgctccatgtcgagctc
gactggcagccgggtgaagagatgccacgcgttacggtgcgccagttccaacctttcgat
gcgctggccaacagcaaacgcatgatgctgacggtgaaggttgcagaacctgctgcactt
gaaaccttggccgaactgcttggcgagaatggcgatggtcgcgggaccgtggttctggag
gccgcaatcggcgatggcggttcagcgcgtgttgtgctcggccgcaatttccagctcgat
ccggaacgggctgatgctatcggccaactacctgcggtgatcgaagcccggttatcggct
gacgcgggaccgatcgccgaagagccgccaaagctcgcgctcgtctcctga
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