Parasphingopyxis sp. CP4: HFP51_10525
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Entry
HFP51_10525 CDS
T09836
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
parp
Parasphingopyxis sp. CP4
Brite
KEGG Orthology (KO) [BR:
parp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parp03032
]
HFP51_10525 (gyrB)
03400 DNA repair and recombination proteins [BR:
parp03400
]
HFP51_10525 (gyrB)
Enzymes [BR:
parp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HFP51_10525 (gyrB)
DNA replication proteins [BR:
parp03032
]
Prokaryotic type
DNA Topoisomerases
HFP51_10525 (gyrB)
DNA repair and recombination proteins [BR:
parp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HFP51_10525 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
Peptidase_C58
Motif
Other DBs
NCBI-ProteinID:
QLC22571
LinkDB
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Position
complement(2170618..2173122)
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AA seq
834 aa
AA seq
DB search
MADKPEEPTSNDADSAPVNTPQKGDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHM
VFEVSDNAIDEALAGHCDRILIQLNADGSVTVEDNGRGIPVGIHKEEGVSAAEVIMTQLH
AGGKFENASDDNAYKVSGGLHGVGVSVVNALSDWLELRVWRDGKEHWMRFRNGEAEAPLE
IVGEAGDRKGTQVTFMPSDQTFKITEFDFEKLEHRYRELAFLNSGVRLFIADARHADREE
VELYYEGGTSAFVQYLDRHKQAIIGDPIAISGERDDIAIDVALEWNDSYHENVLCFTNNI
PQRDGGTHLAAFRSALTRTLNNYAESSGALKKSKVKLTGDDMREGLTAIVSVKLPDPKFS
SQTKDKLVSSEVRQPLESLIADKLVEWLEENPAYAADVIQKVIDAAAAREAAKKAREMTR
KGSMAVASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRHYQAILPLKGKILNVE
RARFDRMLSSKEVGTLIQAMGTGIGRDDFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFF
YRQMPEIVERGHLYIAQPPLYKVAKGRSEVYLKDDAALDAYLINAGLDTMLLETGEGAQR
TGEDLRILIDHARRMRSLMNYVPKRYDPAIVEAFALVGALDEALTEEQREAAVSFVAEWL
ANNDEDATWTGRVAENGDFELQRRWRGVTDVHRIDHAFIRSAEARKLQQVAAEQAENYAL
VGHLVSMKAVEAADGEEVEAKGRTAISRPSELLTAILDAGRKGLSIQRYKGLGEMNADQL
WETTLDPDVRSLLQVHVDQADIADEIFTQLMGDVVEPRREFIQDNALNVANLDV
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaacccgaagaaccgacttccaacgacgccgattccgcgcctgtaaacaca
ccacaaaaaggcgattatggtgccgactcgatcaaggtcctcaagggccttgatgcggtg
cgcaagcggccgggcatgtatatcggcgataccgatgatggctcgggcctgcatcacatg
gttttcgaagtttcggacaatgcgatcgatgaagcgctggccggtcattgcgatcggatc
ctgatccagctcaacgccgatggctcggtcacggtcgaagataatggccgcggcattccg
gttggcatccataaggaagaaggcgtctcggcggccgaggtcatcatgacccagcttcat
gccggcggtaagtttgaaaacgcgtccgacgataatgcctataaagtttcgggcggcctg
catggggtcggcgtcagtgtcgtcaacgcgctgtccgactggctcgagttgcgcgtctgg
cgtgacggcaaagaacattggatgcgcttccgcaatggcgaggcagaggcgccgctcgag
attgtcggtgaagccggggatcgcaagggcacgcaagtcaccttcatgccctccgaccaa
accttcaagatcaccgagttcgatttcgaaaagctcgaacatcgctatcgcgaattggcg
tttctgaattcaggcgtccgcctgttcattgccgatgcgcgccatgccgatcgcgaagag
gtggagctctattatgaaggcggcacctctgcctttgtccaatatctcgatcgtcacaaa
caggcgatcatcggcgatccaatcgccatctccggggagcgcgatgacattgccatcgat
gtcgcgctggaatggaatgacagctatcacgaaaatgttctgtgcttcacgaacaacatt
ccgcagcgcgatggcggcacccatttggcggccttccgctcggcgctgacgcgcaccctc
aacaattatgccgaaagctccggcgcgctcaaaaagtccaaggtgaagctcaccggagac
gatatgcgcgaaggtctgacggcgatcgtttcggtcaaattgcccgatccaaaattcagc
tcgcaaaccaaggacaagctggtctcgtccgaggtgcgccaaccgctcgaaagcctgatc
gccgacaagctggtcgaatggctggaggaaaacccggcctatgccgccgatgtcatccag
aaggtgatcgatgcggctgcggcccgcgaagctgcgaaaaaggcgcgcgaaatgacccgc
aagggatcgatggccgtcgcttcactgcccggtaaattggccgattgccaggagcgcgat
ccggctaaatccgaattgttcctggtcgagggcgacagtgctggcggttctgcgaaacag
ggccgggaccggcattaccaggcgatcctgccgctcaagggcaagatcctcaatgtcgag
cgcgcgcgcttcgatcggatgctctcttccaaggaagtcggcacgctgattcaggcgatg
ggcacgggcatagggcgcgatgatttcgatatcgagaagctgcgctatcacaagatcgtg
atcatgacggacgccgatgttgatggcgcgcatatccgcacattgctgctcactttcttc
tatcgccagatgccggagattgtggagcgtggccatctctacatcgcgcagccaccgctc
tacaaagtcgcgaaggggcggagcgaagtctatctgaaagacgatgcggcgctcgatgcc
tatctgatcaatgcgggccttgatacgatgctgctcgaaaccggcgaaggcgcccagcgg
acgggtgaggatctgcgcatcctgatcgatcatgcacggcgcatgcgctcgctgatgaac
tatgtgcccaaacgctatgacccggcaatcgttgaggcctttgcgttggtcggcgcgctc
gatgaggcgctaaccgaagaacagcgcgaagccgcggtttcctttgttgccgaatggctt
gccaataatgacgaagacgcgacctggaccggccgggttgccgaaaatggcgatttcgag
ctgcagcggcgctggcgcggggtgaccgatgtccatcggatcgaccatgcctttatccgc
tcggccgaggcccgcaaactgcaacaggtcgctgccgaacaggctgaaaattatgcgctg
gttggccatctggtcagtatgaaggcggttgaggctgccgacggtgaagaggtcgaggcc
aagggccgcacggcgatctcgcggccgtcagaattgctgaccgcgatcctcgatgccggg
cgcaagggcctctcgatccagcgctataaggggctgggtgagatgaatgccgaccaactc
tgggaaacgaccctcgatcccgacgtccgctcgctcctccaggtgcatgtcgaccaggcc
gatatcgccgacgaaatcttcacccagctgatgggcgatgtggtggaaccacgccgcgag
ttcattcaggataatgcgctgaacgttgccaatctggatgtgtga
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