Parasphingopyxis sp. CP4: HFP51_12220
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Entry
HFP51_12220 CDS
T09836
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
parp
Parasphingopyxis sp. CP4
Pathway
parp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
parp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HFP51_12220 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parp03400
]
HFP51_12220 (uvrB)
DNA repair and recombination proteins [BR:
parp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HFP51_12220 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HFP51_12220 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
AAA_16
DUF87
Kinesin
UB2H
AAA_22
SWI2_SNF2
SRP54
Motif
Other DBs
NCBI-ProteinID:
QLC22881
LinkDB
All DBs
Position
2479268..2481448
Genome browser
AA seq
726 aa
AA seq
DB search
MAIAIRTGLEEPETDGGFVPHRPDRPDKAEGGKPFELVSDYEPSGDQPTAIAELVETAEA
GEKDQVLLGVTGSGKTFTMAKVIEALQRPGLVLAPNKILAAQLYGEFKQFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRSLLERDDVLIVASVSCLYGIGS
VETYAAMTFDLKKNQVVDQRDIIRKLVSLQYKRNDAAFARGNFRVRGDNLEVFPSHYEDM
AWRISMFGDEIEEIAEFDPLTGKKGTKLDRVRVFANSHYVTPGPTMKQAMGAIRRELEVR
LKELQDAGMLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
DNALLFVDESHQTIPQVGAMARGDHRRKLTLAEYGFRLPSCIDNRPLRFNEWDAMRPQTV
CVSATPGPWEMEQTGGVFSEQVIRPTGLIDPPVFIRPVEEQVDDCINECRETAKKGYRTL
VTTLTKRMAEDLTEFMHEAGLRVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGL
DIPECGLVCILDADKEGFLRSETSLVQTIGRAARNVEGRVILYGDRITGSMERAIAETDR
RREKQREYNALHGITPTTIKRDIADIVAHAASKDQVTVDTGDEEVNNLVGHNLRAYIEDL
EKRMRAAAGDLEFEEAGRLRDEIRRLEAEELGLPADEQVAQPKGRATEGRPGTRKMRYGK
TQRKMR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcgcaatccgaaccggccttgaagagcccgaaaccgatgggggatttgtcccg
catcgtcccgatcggccggacaaggccgaaggcgggaagccgtttgaactggtttccgat
tatgaaccgtccggcgatcagccaaccgcgatagccgagctcgtcgaaaccgccgaagcc
ggcgagaaggatcaggtgcttttgggggtaacaggatcgggcaagaccttcaccatggcc
aaagtgatcgaagccctgcagcgccccggcctggtgctcgcgcccaacaagatcctcgct
gcccagctctatggcgagttcaagcaattcttcccgaacaatgcggtcgaatatttcgtc
agctattatgactattaccagcccgaggcctatgtcccgcggtctgacacctatatcgag
aaagaaagctcggtaaatgaagcgatcgaccggatgcgccattcggccacgcgatcgctg
ctcgagcgcgacgacgtgctgatcgtcgcctcggtgtcttgcctctatggtatcggttcg
gttgaaacctatgcggcgatgaccttcgatcttaagaagaaccaggtcgtcgatcagcgc
gatatcatccgtaaactcgtctcgcttcagtataagcgcaatgatgcggcctttgcgcgc
ggcaattttcgcgtgcgcggcgacaatctcgaagtctttcccagccattatgaagatatg
gcctggcggatcagcatgtttggtgacgagattgaggagatcgccgaattcgatccgctg
accggcaagaaaggcaccaagctcgatcgcgtgcgcgtctttgccaattcgcattatgtc
acgccgggtccgaccatgaagcaggcgatgggcgcgatccggcgcgagctcgaagtgcgg
ctgaaagagctgcaggatgcgggcatgctgctcgaagcgcagcggctggaacagcgcacc
aatttcgatctggagatgatcgccgcgaccggcagctgcgcgggcatcgaaaattactcc
cgcttcctgaccggccgactgcccggcgaaccgccaccgacattgtttgaatatctacct
gataatgcgctgcttttcgtcgatgaaagccatcagacgatcccgcaggtcggcgccatg
gcgcgcggtgaccatcgccgcaaattgacgcttgccgaatatgggttccgcctgccgagc
tgcatcgacaaccgtccgttgcgcttcaacgaatgggatgcgatgcggccgcagactgtc
tgtgtcagcgcgacgcccgggccatgggaaatggaacagaccggcggcgtgtttagcgag
caggtgatccggccgacgggtctcatcgatccgcccgtgtttatccgcccggtcgaagaa
caggtggatgattgcatcaatgaatgccgggaaacggcgaagaagggctatcgcacattg
gtgaccacgctcaccaagcggatggccgaagacctgaccgagttcatgcatgaggcgggt
ctgcgcgtgcgctacatgcatagcgatgtcgaaacgctggagcggattgagctgatccgg
gatctgcggctgggcgtctatgatgttctcgtcgggatcaacctgctgcgcgaaggccta
gacatccccgaatgcggattggtctgcattctcgacgcggacaaggaaggcttcctgcgc
tccgaaacctcattggtgcagacgatcggccgggccgcgcgcaatgtcgaaggccgcgtg
atcctctatggcgatcggataaccggatcgatggagcgggcgattgccgaaaccgatcgc
cgtcgcgaaaagcagagggagtataacgcgctccacggcattacgccgacaacgatcaag
cgcgacattgccgatatcgtcgcccatgccgcgagcaaggatcaggtgacggtcgatacc
ggcgatgaagaggtcaacaatctcgtcggccataatctgcgcgcttatattgaggatctc
gaaaaacggatgcgcgcggcggcgggcgatcttgagtttgaggaagccgggcggttgcgc
gacgagatccggcgattggaagccgaagagctgggcctgccagccgacgagcaggtcgcc
caacccaagggccgcgccaccgaaggccggccgggcacccgcaagatgcgctacggcaag
acccagcggaagatgcgctag
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