Paraconexibacter sp. AEG42_29: DSM112329_00276
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Entry
DSM112329_00276 CDS
T10662
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
parq Paraconexibacter sp. AEG42_29
Pathway
parq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM112329_00276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parq03019
]
DSM112329_00276
03400 DNA repair and recombination proteins [BR:
parq03400
]
DSM112329_00276
Enzymes [BR:
parq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM112329_00276
Messenger RNA biogenesis [BR:
parq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSM112329_00276
DNA repair and recombination proteins [BR:
parq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DSM112329_00276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
RQC
ResIII
Motif
Other DBs
NCBI-ProteinID:
XAY03461
UniProt:
A0AAU7APD7
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All DBs
Position
286745..288655
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AA seq
636 aa
AA seq
DB search
MDLHRALEQHFGFDRFRPGQEQAARAALAGRDTLVVMPTGAGKSLCYQLPALMRPDLTLV
VSPLVSLMADQVQALERVAGGRSPVAALLNAQQDARANDAALRAAVAGELRMLYVAPERL
AAPSVVRALARAKIGLFVVDEAHCVSQWGHDFRPDYFRLADAARWLKADAIIASTATATP
AVAADIVERLQLREPVRVATGFDRPNLAFGVVPCASKAVRHRRLVAALDEPGATPAIVYA
GTRLGCDTIADDLTRALGRPVDAYHAGLARDDRAAVQQRFMSGRTDVVVATNAFGMGVDK
ADVRTVVHATVPPSLEAYYQEAGRAGRDGAPARALLLAAPQDQGLHVFFVEQAQVPDALL
QDLAGRVVAAAVDGRYELPLASLSGRADAARLKAIVGALAQVGVLQPVPAPIDRVRGRLL
APLDAAALAAARELMAAAEAARWAQYRAIWAFAEGSRCRRQALLDHFGDDRPPAAAAGAC
CDVCDRGVVPAAVRAAGDAPPPGAGRASRGPGRSGTAARPRAAPAAGPELDAAIMGVVTT
AQPPVGRTRAVEILRGGRSAAIRRHSYDGLPAYGTYGHLSDADVLGRVDALLAAGALAAG
GGMYPKLHAEPLALRARVRPGDLAQGARSPGSVARP
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggacctgcaccgcgccctcgagcagcacttcggcttcgaccggttccggccgggccag
gagcaggccgcccgtgccgcgctcgcgggccgggacacgctcgtcgtcatgccgaccggc
gccggcaagtcgctctgctaccagctcccggcgctcatgcggccggacctgaccctcgtg
gtgtccccgctcgtgtccctgatggccgaccaggtccaggcgctcgaacgcgtggcgggc
ggacggtcgccggtcgctgcgctgctgaacgcccagcaggacgcgcgggccaacgacgcg
gcgctgcgggccgcggtcgccggcgagctgcggatgctctacgtcgcccccgaacggctg
gccgcgccgtcggtcgtccgcgcgctcgcccgcgcgaagatcggactgttcgtcgtcgac
gaggcgcactgcgtctcgcagtgggggcacgacttccggccggactacttccgcctcgcc
gacgcggcgcggtggctgaaggccgacgcgatcatcgcgtccaccgcgacggcgacgccg
gcggtcgccgcggacatcgtggagcgcctgcagctgcgcgagcccgtgcgggtcgcgacc
ggcttcgaccgcccgaacctggccttcggcgtcgtgccgtgcgcgtcgaaggcggtgcgc
caccggcggctcgtggcagcgctggacgagcccggcgccacgccggcgatcgtgtacgcc
gggacgaggctcggctgcgacacgatcgccgacgacctgacgcgcgccctcggccggccg
gtggacgcctaccacgcgggcctggcgcgggacgaccgcgccgcggtccagcagcggttc
atgagcggccggacggacgtcgtggtcgcgaccaacgcgttcggcatgggcgtcgacaag
gcggacgtgcggaccgtggtccacgccaccgtcccgccgtccctcgaggcctactaccag
gaggcggggcgggcgggacgcgacggggcgccggcccgcgcgctgctgctcgccgcaccg
caggaccagggcctgcacgtgttcttcgtcgagcaggcgcaggtcccggacgcactgctg
caggacctcgccggccgtgtcgtggccgcggccgtcgacggccgttacgagctcccgctc
gcgagcctgtccggccgggccgacgcggcgcggctgaaggcgatcgtcggcgcgctcgct
caggtgggggtgctgcagcccgtgccggcgccgatcgaccgggtccgcggccggctgctg
gccccgttggacgcggctgcactggcggcggcccgggagctgatggcggcggccgaggcc
gcccgctgggcccagtaccgcgcgatctgggcgttcgcggagggatcgcggtgccggcgg
caggcgctcctggatcacttcggcgacgaccgcccgccggcggccgcggcgggtgcgtgc
tgcgacgtctgtgaccgtggcgtggtcccggcggcggtgcgcgcggcgggcgatgcgcca
ccgcccggtgcagggcgggcgtcgcgcgggcccgggcgatcgggcaccgcggcgcgcccg
cgggccgcaccggccgccggcccggagctcgatgccgcgatcatgggcgtcgtgaccacc
gcccagcccccggtcgggcgtacccgcgccgtcgagatcctccgcggcggccgctcggcc
gcgatccggcgccacagctacgacggcctgccggcctatggcacgtacggccacctctcg
gacgcggatgtcctcgggcgggtcgacgcgctgctcgccgccggggccctggcggccggc
ggcggcatgtaccccaagctgcacgccgaaccgctcgcgcttcgcgctcgggttcggccg
ggcgatctcgcccagggggctcgttcgcccgggtcggtggctcgcccgtga
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