Paraconexibacter sp. AEG42_29: DSM112329_01630
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Entry
DSM112329_01630 CDS
T10662
Name
(GenBank) nuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
parq Paraconexibacter sp. AEG42_29
Pathway
parq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM112329_01630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parq03019
]
DSM112329_01630
03016 Transfer RNA biogenesis [BR:
parq03016
]
DSM112329_01630
Enzymes [BR:
parq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DSM112329_01630
Messenger RNA biogenesis [BR:
parq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSM112329_01630
Transfer RNA biogenesis [BR:
parq03016
]
Prokaryotic type
tRNA degradation factors
DSM112329_01630
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
Motif
Other DBs
NCBI-ProteinID:
XAY04793
UniProt:
A0AAU7ASZ9
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All DBs
Position
1688739..1690757
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AA seq
672 aa
AA seq
DB search
MSGDGKGKRKGPPGGSKPASKKKKAHRKGTGPGGPKKGAAAGSSGGPKSARKPGAHRPSA
SGRGDEGGPVERPAAPRTSGRSRQAEPAAAGETVVCRLEHRGRQLSAVPFFARGPRIPIE
RARDGGPDDLVLLQTPRSARGAPKVLRVLGKPDNASVVIEALMLDRGLARRFPPGVEKAA
EEARDAGRAGQLDHIGGAAREDLRRLTTFTIDPVTAKDFDDAISAEAIAPGHWRVWVHIA
DVSAFVRPGSAVDREAYRRATSVYVPGKVEPMLPGQLSNDACSLRQDVDRLAVTAELEVR
GDSVVKARFFRSTIRSDQRLDYDRVDRIFAGIERAEEPWAEPLAAARGAAAALGSRRAGD
ALSIESAEPQFSFDRAGHVDGAQVGVQTESHTLIEHLMVATNEAVARLLSDRSVSSLYRV
HEKPDGARVERLVEQLASLDVATPAVPEHITPDIAARAIVEASRLIDQHATRTGHGRRAL
TSLLLRSLKQAHYAPKNLGHAGLGLTHYAHFTSPIRRYPDLIAHRALLSAIGAGEDAPRG
SAMDEAAVTTSARERDAMKIERAADDVARCFLLERELFEGSGGTGRPFPGEVVGIIEAGA
FVSFGGPDSRAPGGYEGMLPVRRMHGDWWNLNEAGTILSGAVSKESIRLGDAFTVSVHRI
DAPRGRVDLDLS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagacgggaagggcaagcgcaagggcccgcccggcggctccaagcccgcgagc
aagaagaagaaggcccaccgcaagggcacgggaccgggcggtcccaagaagggcgccgcg
gccggatcgtccggcggtccgaagtccgcccgcaagccgggcgcgcaccggccgtccgcg
tccggacggggcgacgaggggggtcccgtcgagcgccccgccgcgccgcgcaccagcggg
cgcagccgccaggccgagcccgccgccgccggcgagaccgtcgtctgccgcctggagcac
cgcggccgccagctgagcgccgtcccgttcttcgcccgtgggccgcggatcccgatcgag
cgggcccgggacggtggcccggacgacctggtgctgctgcagaccccgcggtcggcccgg
ggcgcgccgaaggtgctgcgggtcctcggcaaaccggacaacgcgtcggtcgtcatcgag
gcgctgatgctggaccgcggcctcgcccgtcgctttccgcccggcgtcgagaaggccgcg
gaggaagcgcgtgacgccggccgcgccgggcagctggaccacatcggtggagccgcacgc
gaggacctgcgccggctgacgacgttcacgatcgacccggtcaccgcgaaggacttcgac
gacgcgatcagcgccgaggcgatcgcgcccggacactggcgggtctgggtgcacatcgcc
gacgtcagcgccttcgtccgcccgggctccgccgtcgaccgcgaggcctaccgccgggcg
acgagcgtctacgtccccggcaaggtcgagccgatgctgccggggcagctgagcaacgac
gcgtgctcgctgcggcaggacgtcgaccgcctggcggtcaccgccgagctcgaggtgcgc
ggcgacagcgtcgtgaaggcgcgcttcttccggtcgacgatccgctccgaccagcgtctg
gactacgaccgggtcgaccgcatcttcgcggggatcgagcgtgcggaggagccgtgggcc
gagccgctggccgccgcccgcggcgccgctgccgcgctcgggtcgcgccgcgcgggggac
gcgctcagcatcgagtccgccgagccgcagttcagcttcgaccgggccgggcacgtcgac
ggcgcgcaggtcggggtccagaccgagtcgcacacgctgatcgagcacctgatggtcgcc
acgaacgaggccgtcgcgcggctgctgtccgaccggtcggtctcgtcgctctaccgcgtg
cacgagaagccggacggcgcccgcgtcgagcgcctggtcgagcagctcgcgtccctcgac
gtggcgacgcccgccgtccccgagcacatcaccccggacatcgccgcgcgcgcgatcgtc
gaggcgtcccgcctcatcgaccagcacgccacgcggacgggccacggccggcgggcgctg
acgtcgctgctgctgcgctccctgaagcaggcgcactacgcgccgaagaacctggggcac
gccggcctcgggctgacccactacgcgcacttcacctccccgatccgtcgctacccggac
ctgatcgcccaccgggcgctcctgagcgcgatcggcgcgggcgaggacgcgccgcgcggc
agcgccatggatgaggccgccgtcacgacgtccgcccgcgagcgggacgccatgaagatc
gagcgtgccgccgatgacgtcgcgcgctgcttcctcctggagcgcgagctgttcgagggc
tccggcgggacgggccgcccgttccccggtgaggtcgtcggcatcatcgaggcgggcgcg
ttcgtcagcttcggggggccggactcgagggcgcctggcgggtacgaagggatgctcccg
gtccgccgcatgcacggggactggtggaacctgaacgaggccgggacgatcctgtccggc
gcggtcagcaaggagtcgatccgcctcggcgacgccttcaccgtgagcgtgcaccgcatc
gacgcgccgcggggccgcgtcgacctcgacctctcgtag
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