Paraconexibacter sp. AEG42_29: DSM112329_03104
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Entry
DSM112329_03104 CDS
T10662
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
parq Paraconexibacter sp. AEG42_29
Pathway
parq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM112329_03104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parq03019
]
DSM112329_03104
03400 DNA repair and recombination proteins [BR:
parq03400
]
DSM112329_03104
Enzymes [BR:
parq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM112329_03104
Messenger RNA biogenesis [BR:
parq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSM112329_03104
DNA repair and recombination proteins [BR:
parq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DSM112329_03104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
ResIII
RecQ_Zn_bind
HHH
Motif
Other DBs
NCBI-ProteinID:
XAY06237
UniProt:
A0AAU7AX78
LinkDB
All DBs
Position
complement(3199394..3201706)
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AA seq
770 aa
AA seq
DB search
MCPGRDGPQPVVQGTRGAVGSRRYVPGVHDALAQLAEVFANPGAPDASRRLDTVRAAWKQ
LDKAERAALTPLAKLAAERVAAAEEAARPSLFDAPAAAATTPPVAAAPTAPVPAHRDPVP
SAPASAPAPAPADHGPAPATTASPSDEDDYFAYLATVEDGSAGSGGEDWGSAPAWEGDSA
ESPVPAGPPPERASLAHVTPDSLLAHLGLESFRPGQREAVQAALDGRDSLVVMPTGGGKS
LCYQLPALAGKDLTVVVSPLIALMRDQCQRLTDLGHPAVMLASGGDGDSNRRALGAIRDG
TAKVVFAAPERFASGVFRNALRTRALALFVVDEAHCVSEWGHDFRPDYLRLAAVIAELGH
PPVMACTATATPKVADEIVARLALREAERVRSGFDRPNLSFDVLPFDGEGSVARKRATLV
AGVSDPANRPAVVYCGTRKSTEEVTDMLAAAGLNAVGYHAGMSGDVRARRQDTFMRGDAD
VVVATNAFGMGVDKADVRSVWHWALPSSLEAYYQEAGRAGRDGELGRAVLLASRSDLGRL
VRFIREAEVTVEQVGALVGRLRAQAGGGGAAEVDAGQDRDRIALAIAERAGALTLQPGAG
GRLRVQLAAGDVDHRAIAQMCRASTDRRWQAYRSIEKYAGGGDVCRRRQLLDHFGDPEEG
HPLGRCCDVHDPVDWLPEIKVAARRSSRSGSGSAPVDDGPPVADADLEPLKAWRRQRAAG
KPAYTVATDATLREVVRRRPSTADELLAIKGIGPGFVQKHAEDLLALLQG
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccgggccgcgacggtcctcagcccgtcgtgcaggggacccgcggtgcggtcggg
tcgcgccgctacgttccaggggtgcacgacgcgctcgcccagcttgccgaggtcttcgcg
aatcccggcgcgcctgacgcctcccgccgcctggacaccgtccgcgccgcctggaagcag
ctggacaaggccgagcgggccgcgctgacgccgctggccaagctggccgccgagcgcgtc
gccgcagccgaggaggctgcccgcccgtccttgttcgacgctcccgccgcggcagccacc
actccgccggtcgccgcggcgccgaccgcccccgtgcccgcccaccgcgatcccgtcccg
tccgcgcccgcgtccgcgcccgcgcccgcgccggccgaccacgggcctgcacccgcaacg
accgcgtccccgagcgacgaggacgactacttcgcctacctggcgaccgtcgaggacggt
tccgcagggtccggcggcgaggattgggggtcggcccccgcctgggagggcgattccgcg
gaatcaccggtccccgccggcccgccgccggagcgcgcctcgctggcccacgtcacgccc
gactcgctcctggcgcacctcggcctggagtccttccgtcccgggcagcgcgaggcggtc
caggccgccctcgacgggcgcgactcgctcgtcgtcatgccgaccggtggcggcaagagc
ctctgctaccagctcccggcgctcgcgggtaaggacctgaccgtcgtcgtctcaccgctg
atcgccctcatgcgcgaccagtgccagcgcctgacggacctcgggcacccggccgtgatg
ctggcgtcgggtggggacggggacagcaaccgccgcgcgctcggcgccatccgcgacggc
accgccaaggtcgtcttcgccgcacccgagcggtttgcgtccggcgtgttccggaacgcc
ctgcgcacgcgggctctcgcgctgttcgtcgtcgacgaggcgcactgcgtcagcgagtgg
ggccacgacttccggccggactacctgcgcctggcggccgtcatcgccgagctcggccat
ccgccggtcatggcctgcacggcgaccgcgacgccgaaggttgcggacgagatcgtcgcg
cggctggcgctgcgcgaggccgagcgcgtgcgctccggcttcgaccggccgaacctgtcc
ttcgacgtgctgccgttcgacggcgagggctcggtcgcccgcaagcgcgccacgctggtt
gccggtgtgtccgacccggccaaccgcccggccgtcgtctactgcggcacgcgcaagagc
accgaggaggtcaccgacatgctcgcggccgccggcctgaacgccgtcggttaccacgcg
ggcatgtccggggacgtgcgcgcccggcgccaggacaccttcatgcgcggcgacgcggac
gtcgtcgtcgccacgaacgccttcggcatgggcgtcgacaaggccgacgtgcgctcggtc
tggcactgggcgctgccgtcctcgctcgaggcctactaccaggaggccgggcgtgcgggc
cgcgacggcgagctggggcgcgcggtcctgctcgcctcgcggtcggacctcgggcgcctg
gtccgcttcatccgcgaggccgaggtcaccgtcgagcaggtcggcgcgctcgtcggccgc
ctgcgcgcgcaggccggcgggggcggggcggccgaggtcgacgccggtcaggaccgcgac
cgcatcgcgctggcgatcgccgagcgtgccggtgccctcacgctgcagccgggcgccggg
ggccgtctgcgggtgcagctcgccgcgggcgacgtcgaccatcgcgcgatcgcgcagatg
tgccgggcgtcgacggaccggcgctggcaggcctaccgatcgatcgagaagtacgccggc
ggcggggacgtctgccgacggcgtcagctcctggaccacttcggcgaccccgaggagggg
cacccgctcggccgctgctgcgacgtccacgaccccgtcgactggctgccggagatcaag
gtcgctgcgcgcaggtcgtcccgtagcggctcgggctccgcgcccgtggacgatggcccg
cccgtcgccgacgccgacctcgagccgctgaaggcgtggcgccgccagcgcgccgcgggc
aagcctgcgtacacggtcgcgacggacgcgaccctgcgcgaggtcgtgcgccgccgcccc
tccaccgccgacgagctgctggcgatcaagggcatcggccccggcttcgtgcagaagcac
gccgaggacctgctggcgctgctgcagggctga
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