Paracoccus sp. Arc7-R13: EOJ32_04120
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Entry
EOJ32_04120 CDS
T06050
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
parr
Paracoccus sp. Arc7-R13
Pathway
parr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EOJ32_04120 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parr03019
]
EOJ32_04120 (rnr)
03016 Transfer RNA biogenesis [BR:
parr03016
]
EOJ32_04120 (rnr)
Enzymes [BR:
parr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EOJ32_04120 (rnr)
Messenger RNA biogenesis [BR:
parr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EOJ32_04120 (rnr)
Transfer RNA biogenesis [BR:
parr03016
]
Prokaryotic type
tRNA degradation factors
EOJ32_04120 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
DUF7165
Motif
Other DBs
NCBI-ProteinID:
AZY92953
LinkDB
All DBs
Position
827539..829788
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AA seq
749 aa
AA seq
DB search
MTQTQIPSKAQILEWVSDNPDANSKRDIAKAFGIKGAARIELKRLLKELEAEGHLERRRR
HYLDAETLPPVTVLELLAPDGSGDLFARPLEWSGTGPMPRILYAPLKADPALGRGDRFLG
RLMPVLGEDYQYRARLIRRITASANRITGIFRKDSEGGRILPIDKGQDKEWRVRADATLD
AENGELVQGEQIGPRGRMGLPQARIIERLGDPSAPRAVSLIAIHQHGIPDEFPQKALDEA
EAAKPAPLKGRDDLRHLPLVTIDPSDARDHDDAVAAFVEEDGGATIWVAIADVAHYVRPG
SALDREAWGRGNSTYFPDRVVPMLPEALSADLCSLHEGVDRPVIAVEMRLDAQGNKTGHR
FHRAMMNSRASLAYEQAQAGADGVPDAQTAPLMDDVIRPLWHAYGLLKGARERRQPLELD
LPERRIELSPEGRVTAVAFRERLDAHKLIEEFMVLANVAASEELTRHKRPLLFRVHEEPS
LAKMDALREVAQASGFTLAKGQVLHTSHLNRLLSQAEGSDFDELINISTLRSMTQAYYHP
ENFGHFGLSLKSYAHFTSPIRRYADLVVHRALISAHGWGKDGLTEDQVERLPETATHISE
TERRSMAAERDTTDRYLAAFLAERVGTEMTGRISGIQKFGAFVKLDETGADGLLPIRAIG
QEYFHFDPDRQMLIGSDTGLEIGIGQRVTVRLAEALPLTGGLLLDLLELEGATLPRGPSK
GRRGGGPGRMAVKSRLAEIKRATKRRRKR
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgacccagacccagatccccagcaaggcgcagatcctcgaatgggtgtccgacaatccg
gacgccaattccaagcgcgacatcgccaaggccttcggcatcaagggcgccgcgcggatc
gagctgaagcggctgttgaaggagctggaggccgagggccatctggagcgccgccgccgc
cattacctggacgccgagacgctgccgccggtgacggtcctggaactgctggcgccggac
gggtcgggcgatctgttcgcgcgaccgctggaatggtcggggaccgggccgatgccgcgg
atcctgtacgcgccgctgaaggccgatccggccctgggccgcggcgaccggttcctgggc
cggctgatgccggttctgggcgaggactatcagtaccgcgcccgcctgatccgccgcatc
acggccagcgcgaaccgcatcaccggcatcttccgcaaggacagcgagggcggccgcatc
ctgcccatcgacaagggccaggacaaggaatggcgcgtccgtgccgacgccaccttggac
gccgagaacggcgaactggtgcagggcgaacagatcggcccacgcggccgcatgggcctg
ccgcaggcgcgcatcatcgaacgtctgggcgatccgtcggcgccccgcgcggtcagcctg
atcgcgatccaccagcacggcatccccgacgaatttccgcaaaaggcgctggacgaggcc
gaggccgccaagcccgcgccgctgaaggggcgggacgacctgcgccatctgccgctggtc
accatcgacccgtcggacgcgcgcgaccacgacgatgcggtcgcggccttcgtcgaggag
gacggcggtgcgacgatctgggtcgccatcgccgacgtggcccattacgtccgccccggc
agcgcgctggaccgcgaggcctgggggcgcggcaactcgacctatttccccgaccgcgtg
gtgccgatgctgccagaggcgctgtcggcggacctgtgttcgctgcacgagggcgtcgac
cgacccgtcatcgcggtcgagatgcggctggacgcgcagggcaacaagaccggccaccgg
ttccaccgcgccatgatgaacagccgcgccagccttgcctatgagcaggcgcaggcgggc
gcggacggggtgcccgacgcgcagaccgcgccgctgatggacgacgtgatccgcccgctg
tggcatgcctatggcctgctgaagggtgcgcgcgagcgccgccagccgctggaactggac
ctgccggaacgccggatcgagctgtcgcccgagggacgcgtcacggccgtggcgttccgc
gaacgcctggacgcgcacaagctgatcgaggagttcatggtcctggccaacgtggccgcc
tccgaggagctgacccgtcacaagcgccccctgctgttccgcgtccacgaggagccgagc
ctagccaagatggacgcgctgcgcgaggtggcccaggcctcggggttcacgctggccaag
gggcaggtgctgcacaccagccacctgaaccgcctgctgtcccaggccgagggcagcgat
ttcgacgagctgatcaacatcagcacgctgcggtcgatgacccaggcctattaccacccc
gagaatttcggccatttcggcctgtcgctgaaaagctatgcgcatttcacctcgcccatc
cggcggtacgccgacctggtggtgcatcgggcgctgatcagcgcgcatggctggggcaag
gacgggctgaccgaggatcaggtcgaacgcctgcccgagaccgcgacccatatcagcgag
accgagcggcgatccatggccgccgaacgtgacacgaccgaccgctatctggcggcgttc
ctggcggaacgtgtgggcaccgagatgaccggccgcatcagcggcatccagaagttcggc
gccttcgtcaagctggacgagacgggggccgacgggctgctgcccatccgcgccatcggg
caggaatatttccacttcgacccagaccgccagatgctgatcggcagcgacacgggcctg
gagatcggcatcggacagcgggtgaccgtgcgcctggccgaggcgctgcccctgaccggg
gggctgctgctggacctgctggagctggagggcgcgaccctgccgcgcggtccgtccaag
ggacgccgcggcggtggaccgggtcgcatggccgtcaagtcgcggctggccgagatcaag
cgcgccaccaagcggcggcgcaagcgctga
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