Paracoccus sp. Arc7-R13: EOJ32_12875
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Entry
EOJ32_12875 CDS
T06050
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
parr
Paracoccus sp. Arc7-R13
Brite
KEGG Orthology (KO) [BR:
parr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
parr03016
]
EOJ32_12875 (rnd)
Enzymes [BR:
parr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
EOJ32_12875 (rnd)
Transfer RNA biogenesis [BR:
parr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EOJ32_12875 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AZY95278
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All DBs
Position
complement(2589976..2591145)
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AA seq
389 aa
AA seq
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MPTITRTEDLARFCEAAKLAPYVTVDTEFLRERTYWSKLCLIQLAIPPASTAKTGGGDAV
LVDPLSEELSLEPLYDLFRHEATVKVFHAARQDLEIFYHDAQLFPVPLFDTQVAAMVCGF
GEQVGYETLVRKIARADLDKSSRFTDWSRRPLSDAQAAYALADVTHLRVIYEYLSAELKK
TGREAWLAEEIAVLEDPETYITRPEEAWLKVRTRTNSPRFLAILRELARFRESYAQARDI
PRSRVYKDDAMIELASTKPLTEADLGKSRLLLREARKGDIANGILAAVKAGIESKDLPQP
KGEEPGKPGNAALSDLLRVLLKAKADAAGVAPKLIASSSELDALATGSRDLPALQGWRAE
VFGRDALRLAAGEIALSAKGGAVRVVPVG
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atccccaccatcacccgcaccgaagacctcgcccgtttctgcgaggccgcaaagcttgcc
ccctatgtgaccgtcgacacggagttcctgcgcgagcggacctattggtccaagctgtgc
ctgatccagctggcgatcccgccggcatcgacggccaagaccggcgggggcgacgccgtc
ctggtcgatcccctgtccgaggagctgtcgctggaaccgctttatgacctgttccgccac
gaggcgacggtcaaggtgttccacgccgcccgccaggatctggagatcttctatcacgac
gcgcaactgttccctgtgccgctgttcgacacccaggtcgcggccatggtctgcggtttt
ggcgaacaggtcggctacgagacgctggtccgcaagatcgcccgggccgacctggacaag
tcttcgcgttttaccgactggtcgcgccgtccgctgtcggatgcgcaggccgcctatgcg
ctggccgacgtgacccatctgcgggtgatctatgaatacctgtcggccgagctgaagaag
accggccgcgaggcatggctggccgaggagatcgcggtcctggaggaccccgagacgtat
atcacccgccccgaagaggcctggctcaaggtgcgtacccgcaccaactcgccccgcttc
ctggcgatcctgcgcgaactggcgcggttccgcgaaagctatgcccaggcgcgcgacatc
ccccgcagccgcgtctacaaggatgacgcgatgatcgagctggcctcgaccaagccgctg
accgaggccgatttgggcaagtcccgcctgctgctgcgcgaggcgcgcaagggcgacatc
gccaacggcatcctggccgcggtcaaggccgggatcgaatccaaggacctgccgcagccc
aagggcgaggagcccggcaagcccggcaatgccgccctgtcggatctgctgcgcgtgctg
ctgaaggccaaggccgatgcggcgggcgtcgcgccaaagctgatcgcgtcgtcgtccgaa
ctggacgcgctggccaccggcagccgcgacctgccggcattgcagggctggcgggccgag
gtctttggccgcgacgctttgcgtctggccgccggggagatcgcgctgtcggccaagggc
ggcgcggtccgggtcgtgccggtcggatag
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