Pseudoalteromonas arctica: PARC_a0291
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Entry
PARC_a0291 CDS
T05179
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PARC_a0291 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
part03021
]
PARC_a0291 (rpoB)
03400 DNA repair and recombination proteins [BR:
part03400
]
PARC_a0291 (rpoB)
Enzymes [BR:
part01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PARC_a0291 (rpoB)
Transcription machinery [BR:
part03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PARC_a0291 (rpoB)
DNA repair and recombination proteins [BR:
part03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PARC_a0291 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ATC85044
UniProt:
A0A290RXA6
LinkDB
All DBs
Position
I:279756..283781
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLSTQLESFKKFLVPDADGDHGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTYSAPLRVKLRLVVMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKTHSSGKVLYNARVIPYRG
SWLDFEFDAKDNLYVRIDRRRKLPASIILRALEYSSEQILDMFFDNTTFEVTNGKVLMEL
VPSRLRGETAAFDIKSEDGEVFVESGRRVTARHIKSIEKKGIKQLEVPHEYIIGRIVAKN
YVDESTGEVIANANDELTLELMAELVKAGYTKIDTLYINEVDSGAYMSNTLNIDSASSRL
EALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSTVGRMKFNSRVGYDTDTGPGTL
SKEDIVSVMKVLIAIRNGQGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVT
DEVDYLSAIEEGQFVIAQANSNLTETNEFVDELIPCRHKGESTFMGRMDQQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLKADKPLVGTGIELTLAKDSGVTIVAKR
GGEVMYADASRIVVNVHEEERIPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVTRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVEEDRLTTIHIQELQCVA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEAGVLDRARKLLIAAGFDEDKLASLNAEKVLTQSLAEEDKQAELEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDDKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERIEEMMKEQRELHE
LRDFIKQAYEIGESRQVVDIASFTDDEIRRLAENLKGGLPIATPAFDGAKESEIKDMLEL
AGYPRSGQVTLYDGRTGDQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEEN
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggatataccttttttactgtctacacagttagaatcgtttaaaaaattcttagtg
ccggacgctgatggcgatcatggtttggaagctgccttccgttctgtgttccctattaaa
agctactcgggaaattctgagcttcaatacgtaagttaccgtattggtgagccagttttc
gatgtaaaagaatgtcaaattcgcggtgtgacttattctgctccacttcgcgtgaaactg
cgtcttgttgttatggacaaagaagcaccaggcacagttaaagacattaaagagcaagaa
gtttacatgggcgaaattccgctcatgacagataccggtacttttgtaatcaatggtaca
gagcgtgttatcgtttctcagctacaccgtagccctggtgtattctttgataacgaccgc
ggtaaaacccattcatcgggtaaagtattatataacgcacgcgttataccttaccgtggt
tcatggttagacttcgaatttgatgcaaaagataacttatatgtacgtattgaccgtcgt
cgtaaattaccggcgtctatcatcctacgtgcactagagtattctagcgaacaaatccta
gatatgttcttcgataacactacgtttgaagtaacgaatggtaaagttcttatggaactt
gtaccttcgcgtttacgtggtgaaactgccgcttttgatatcaagagcgaagacggtgaa
gtatttgttgaaagcggtcgtcgtgttacggctcgccacatcaagagcatcgaaaagaaa
ggcattaagcaattagaagtaccacatgagtacatcattggccgtattgtagctaaaaac
tatgttgatgagtcaactggtgaagttattgcaaatgcaaatgacgagctaactctagag
ctaatggctgaattggttaaagccggttacactaaaattgatacgttatatatcaatgaa
gtggacagcggtgcttacatgtcaaatacattaaacattgactctgcaagcagccgttta
gaagcactagtagaaatttaccgcatgatgcgcccaggcgagccaccgacgaaagacgcg
gctgaagccttattccagaacttgttcttctctgaagaacgttatgacttatctactgta
ggtcgtatgaagttcaatagccgtgttggttacgatacagacacaggccctggcacatta
agcaaagaagacatcgtgtctgttatgaaagtattaattgctattcgtaacggtcaaggc
gatgttgatgatatcgatcacttaggcaaccgtcgtatacgtagtgttggcgaaatggct
gagaaccaattccgtgttggtctagtacgtgttgaacgtgctgtacgtgagcgtttaagc
ttaggtgaccttgacgcgataatgccacaagatcttattaacgctaagcctatttcggca
gctgttaaagagttcttcggctcgtctcagttatcacagtttatggaccaaaataaccca
ctatcagaagttacgcataaacgtcgtatctctgcattaggtccgggcggtctaactcgt
gaacgcgcaggctttgaagtacgtgacgttcacgtaactcactatggtcgcgtatgtcca
atcgagactcctgagggtccaaatatcggtctaattaactcgttgtctacgtacgcacgt
acaaatgactacggtttcttagaaacaccttaccgcaaagtggtagacggtgttgtaact
gatgaagttgattatttatcagccattgaagaaggtcagtttgttatcgcacaggcgaac
tcaaacttaactgaaaccaatgagtttgttgatgaacttatcccatgtcgtcacaaaggt
gaatctacctttatgggtcgcatggaccagcagtatatggatgtatcaccacaacaggtg
atctctgtagcggcagcacttatcccgttcttagaacacgatgatgctaaccgtgcattg
atgggttcaaacatgcaacgtcaagcagtaccaacattgaaagcggataagccgttagta
ggtactggtattgagttaacactagcgaaagattctggtgtaactatcgttgctaaacgt
ggtggtgaagtaatgtatgctgacgcaagtcgcatcgttgtaaatgtacatgaagaagaa
cgcattcctggtgaagcgggcatcgacatctacaacttaaccaaatacacacgttcaaac
caaaatacatgtattaaccaaaaaccaacttgtatggttggcgaaccggttactcgtggt
gacgtgttagcagatggtccttcgactgacttaggtgacttagcccttggtcaaaacctt
cgcgtggcattcatgccatggaacggttataacttcgaagattcaatcttgttatcagag
cgcgtagttgaagaagatcgtctaacgactatccatattcaagaactacagtgtgttgcc
cgtgatactaaattaggtccagaagagatcactgcagatatcccgaatgtgggtgagtct
gcgctaggcaagcttgatgaatcaggcgttgtatatattggtgctgaagttaaaggcggc
gatatcctagtaggtaaagtgactcctaaaggcgagacacagcttacacctgaagagaag
ctactgcgtgctatcttcggcgaaaaagcgtctgacgttaaagacagctctttacgtgta
ccaaattctgtaactggtactgtaattgacgtgcaagttttcacccgtgatggtgttgaa
aaagataaacgcgcgttagaagttgaagacatgcagcttcgcgaagcgaagaaagacttc
aacgaagagttccgtattttagaagcaggcgttttagaccgtgcacgtaagctacttata
gctgctggttttgatgaagataaacttgcatctctaaatgctgaaaaagtgcttacgcaa
agccttgctgaagaagacaagcaagctgagcttgagcagcttgctgcacaatacgatgaa
cttaaagctgaatacgataagaagtttgaaaacaaacgtcgtaaaattacccaaggtgat
gacttagcaccaggcgtacttaagattgttaaagtatacctagctgttaaacgtcgtatc
caaccgggtgataaaatggcgggtcgtcatggtaacaaaggtgttatctcgactatcgta
ccagtagaagatatgccttacgatgacaaaggtcgtacggtagatatcgtattgaatcca
ctaggtgtaccatcacgtatgaacatcggtcagatccttgaaacacatatgggtcttgct
gcacgtggtatcggtgaacgtattgaagagatgatgaaagagcaacgtgagcttcatgag
ctacgtgacttcatcaagcaagcatacgaaattggcgaatctcgccaagttgtagatatt
gctagcttcactgatgacgaaattcgtcgtctagctgaaaacttaaaaggtggtttacca
atagctactcctgcatttgatggcgcgaaagaaagcgaaatcaaagacatgcttgagctt
gcgggctatcctcgtagtggtcaggttacactttatgatggccgtactggcgatcagttt
gaacgtcaagtaactgttggttacatgtacatgcttaaacttaaccacttggttgacgat
aagatgcacgcacgttctactggttcttacagccttgttactcagcagccgctgggtggt
aaagcacagttcggtggccagcgttttggtgagatggaagtatgggcacttgaagcttat
ggtgctgcttacactctacaagaaatgctaacagtgaaatcggatgacgtgaacggtcgt
actaagatgtataaaaacatcgttgatggtaaccataaaatggaaccaggtatgccagaa
tcgttcaacgtattgttgaaagaaatccgctcactgggtatcaacatcgagttggaagaa
aattaa
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