Pseudoalteromonas arctica: PARC_a0292
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Entry
PARC_a0292 CDS
T05179
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PARC_a0292 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
part03021
]
PARC_a0292 (rpoC)
03400 DNA repair and recombination proteins [BR:
part03400
]
PARC_a0292 (rpoC)
Enzymes [BR:
part01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PARC_a0292 (rpoC)
Transcription machinery [BR:
part03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PARC_a0292 (rpoC)
DNA repair and recombination proteins [BR:
part03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PARC_a0292 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ATC85045
UniProt:
A0A290RZG7
LinkDB
All DBs
Position
I:283886..288061
Genome browser
AA seq
1391 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDSLEEHGDEFEAKM
GAEAVLDLLRELDLAQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGAIFKDPKEAEKAYRSG
NADLHAIVKVRISQSVKNEDGVVEDTITVIDTTVGRAILSLILPKGMPFASINQPLGKKQ
ISGLLNECYRRLGLKDTVIFADQVMYTGFHYAMKSGVSIGIDDLVIPPVKAQIIESAEAE
VTEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMSNLSKDTVINAQGEEVEQPSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEDDCGTEDGLTMKPLIEGGDVVEALRERVL
GRVVAEDIVIPGTNTVLVERNIMLDEKLCDLLEEHSVDEVRVRSVITCDNDFGVCANCYG
RDLARGHIINAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKTNGTLKL
HNSKYVLNTDGKIVITSRSTEITIIDSHGREKERYKVPYGAVLTVQDNAEVLGNDIVATW
DPHSHPIVLEHKSKVSFSDIDDSNTEAQTDELTGLTRVVVKDLAKVNTKEPKLIIESEER
GLQETRLPSFTTIEVIDGVTANPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKEPA
ILAEVTGTISFGKETKGKKRLVITPAEGDHYEEMIPKWRQLNVFEGEQVSKGEVIADGPE
SPHDILRLRGVTHVANYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTIMHGGDTDFL
AGEQIEVARVNIANRDLEKQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQERMARRKQSKVVVEEQTVSAEEATQALT
DALNADLSGNQ
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcaccagacatggttcgttcatggtcatacggtgaagtaaagaaa
cctgagactattaactaccgtactttcaagcctgagcgcgatggcttattctgtgcccgt
attttcggcccagtgaaagattatgagtgtttatgtggtaaatataaacgccttaaacac
cgtggtgtgatctgtgaaaagtgtggcgttgaagtaacactcactaaagtgcgacgcgat
cgtatgggtcatatcgaccttgcgagcccagttgcacatatatggtttttaaaatcatta
ccgtcacgtattggcttaatgctagatatgacgcttcgtgatattgaacgtgttctttac
ttcgaatcattcgtagtaactgaacctggtatgacaacgcttgagcgtggtcagttatta
ggtgaagaagaatacttagattcactagaagagcacggtgatgagtttgaagctaagatg
ggtgctgaagcagttttagacttgcttcgtgaacttgatcttgctcaattaattgctgag
atgcgtgaagagttaccaacaattaactctgaaactaagcgtaaaaaaatcactaaacgt
cttaagttaatggaatcgttccaccaatcaggtaataaccctgagtggatgatcatgaca
gtacttccagtattgccacctgatctacgcccattagtaccattagacggtggtcgtttt
gcgacatctgatctaaatgacctttaccgtcgtgttattaaccgtaataaccgtcttaag
cgtctactagatttagcagcaccagacattattgtacgtaacgaaaaacgtatgttacaa
gaagcggtagatgcgctacttgataacggtcgtcgtggtcgtgcaattacaggttctaac
aaacgtcctcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaagcgtgtagattattcaggccgttctgtaatcacagttggtcctaca
cttaagcttcaccaatgtggtcttcctaagaagatggcactagagctattcaaaccattc
atctatggcaaattagaacgtcgcggcatggctacgacaatcaaagctgctaagaagatg
gttgaacgtgaagttccggaagtatgggatgtacttgacgaagtaattcgtgaacatcca
gtattacttaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgagcctgtg
cttatcgaaggtaaagcgattcatttgcatccattagtatgtgcggcttacaacgccgat
ttcgatggtgaccaaatggcggtacacgtaccgttaacaatcgaagcgcagcttgaagct
cgtgcattgatgatgtcaacaaacaacattctatctcctgcgaatggtgagccaatcatc
gttccttcacaggatgttgtattgggtctttattacatgactcgtgaccgcattaacgct
aaaggcgaaggcgcgatatttaaagatccaaaagaagcagaaaaagcataccgcagtggc
aatgcagaccttcacgcaattgtgaaagtacgtattagccaatcagttaaaaacgaagac
ggcgtagtagaagatactattactgttatcgatacaactgttggtcgtgcgattctgtct
ctaattttacctaaaggcatgccgtttgcgtcaatcaaccagccgctaggtaaaaagcag
atttctggcttattgaatgagtgttaccgtcgtctaggtcttaaagatacagttatcttt
gctgaccaagttatgtacaccggtttccattatgcaatgaagtcaggtgtttctatcggt
attgatgacttagttatcccaccggttaaagcacagataattgaatcagctgaagctgaa
gttactgaaatcaaccaacaattccaatcaggtcttgtaacggctggtgaaaagtacaac
aaagttatcgatatctggtcacgtgtaaacgaaaacttatcacgtgagatgatgtctaac
ttgtcgaaagacacagttatcaatgcacaaggtgaagaagtagagcaaccgtcatttaac
tcagtgtttatgatggccgactcaggtgctcgtggtagtgctgcacagattcgtcagttg
gcgggtatgcgtggtctaatggcacgtccagatggttcaatcatcgagactccaatcaca
gctaacttccgtgaaggtctaaacgtacttcagtacttcatctcaacgcatggtgcgcgt
aaaggtcttgccgatacagcacttaaaacagcaaactcgggttacctaacgcgtcgtcta
gtagacgttgcacaagatttggtaatcaatgaagatgactgtggcacagaagatggctta
acaatgaaaccgcttattgaaggtggtgatgttgtagaagcacttcgtgaacgtgttcta
ggtcgtgttgttgctgaagatattgtgattccaggtactaatacagtgcttgttgaacgt
aatatcatgctagacgaaaaactgtgtgatcttttagaagagcattcagtagatgaagtt
cgtgtacgttctgttatcacttgtgataatgactttggtgtttgtgctaactgttatggt
cgtgacctagcacgtggtcatatcatcaacgctggtgaatcagtgggtgttatcgcggca
cagtcaattggtgagccgggtacacagttaacaatgcgtaccttccacatcggtggtgcg
gcatctagagcgtctgcagaaaataatgtacaagttaaaactaacggtacattaaaactt
cataactctaagtacgtattaaacacagacggtaagattgttattacctctcgttctacg
gaaattactatcattgatagtcatggtcgtgagaaagagcgttataaagtaccttacggt
gcggtattaacagtgcaagacaatgctgaagttctaggtaacgatatcgttgctacttgg
gacccgcatagtcacccaatcgttcttgagcataaatcaaaagtatcgttcagcgatatc
gatgattcaaatactgaagcacagactgatgagctaactggtttaacccgtgtagttgta
aaagatcttgctaaagtaaatacgaaagaaccaaagcttatcatcgaaagtgaagagcgc
ggtctgcaagaaacacgtcttccttcattcacgacgattgaagttattgacggcgttaca
gcaaacccaggtgacgtgttagcacgtattccgcaagaaggttcgaaaactcgtgatatc
acgggtggtctaccacgcgtagccgacttatttgaagctcgtaagccaaaagaaccagct
atattagctgaagtaactggtacaattagcttcggtaaagagactaaaggtaagaagcgt
ttagttattactccagctgaaggtgatcattacgaagagatgattcctaaatggcgtcaa
cttaacgtgtttgaaggtgagcaagtgtctaaaggtgaagttatcgccgatggtcctgaa
tcaccgcatgacatcttacgcctacgtggtgtgactcatgttgctaactatatcgttaac
gaagtgcaagaggtttaccgtttgcaaggcgttaagatcaatgacaagcacattgaaaca
attatccgtcaaatgttacgtaaatgtaccattatgcacggcggtgatactgacttctta
gccggtgagcaaatcgaagtggcgcgcgttaatatcgcaaaccgtgaccttgaaaaacaa
ggtaagataccagctaagtttgaaatccagttaatgggtatcacaaaagcatcactagca
acagaatctttcatctctgcagcgtctttccaagagacaacacgtgttcttacagatgcg
gcagtgaatggtaagagcgatgagcttcgcggtcttaaagaaaacgtaattgtgggtcgt
ttgatcccagccggtaccggttttgcgtatcatcaagaacgtatggctcgccgtaaacaa
agcaaagtagtagtagaagagcaaacagtaagtgcagaagaggcaactcaagcacttaca
gacgctctaaatgctgatttgtctggaaatcaataa
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