Pseudoalteromonas arctica: PARC_a0768
Help
Entry
PARC_a0768 CDS
T05179
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PARC_a0768 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
part03019
]
PARC_a0768 (vacB)
03016 Transfer RNA biogenesis [BR:
part03016
]
PARC_a0768 (vacB)
Enzymes [BR:
part01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PARC_a0768 (vacB)
Messenger RNA biogenesis [BR:
part03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PARC_a0768 (vacB)
Transfer RNA biogenesis [BR:
part03016
]
Prokaryotic type
tRNA degradation factors
PARC_a0768 (vacB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
VOZ_N
Motif
Other DBs
NCBI-ProteinID:
ATC85470
UniProt:
A0A290S2R7
LinkDB
All DBs
Position
I:757816..760311
Genome browser
AA seq
831 aa
AA seq
DB search
MSNQDPNLSREQEKYENPVPSREFILTHLQERSKPANYAQLCEELAVNDDERQIAFKRRL
RAMERDGQLYFNKFKCYALIDEAGLTKGKVIGHRDGFGFLEVEGESKDWFIAKHQMNMVL
HGDIVLAKGTKRGSGSKCDARIIKVLTNERAPIVGRYFVEHGVAVVVAEDPRITQDIMIL
PGNENGARHNQMVQVKITQNPSRNMNAVGKIIDVLGEHLAPGMEIEVALRNHDIPHVWPE
EVEAQVAHLGEFVEDADKKGRVDLRDLPLVTIDGEDARDFDDAVYCEPKKSGGWRLWVAI
ADVSHYVGMNTPLNKEAILRGNSVYFPEQVIPMLPKVLSNGLCSLNPKVDRLCMVAEMTV
SSAGKLSGYKFYEAIMNSHARLTYTKVNAILQNDEKLREEYSAVVPHLTDLQQMYMALKA
ARQDRGAIEFETLETRFVFNAQRKIESIVPVIRNDAHKLIEECMILANVSAAKILEKHEA
SALYRVHDEPDSEKLGNFTKFLGELGIESTLSDEPTPKEITQVLARLGDRPEAELIQTML
LRSMKQAVYQPDNIGHFGLALSAYAHFTSPIRRYPDLVVHRAIKAVIKAQGQQTSGEYAY
TDDEVDQLGEQCSTTERRADDATREVADWLKCEFMQDHVGDEFDGVISSVTNFGLFIRLD
DLQIDGLIHVTNLGDEFFAHDAAKHTLIGEHSHKVYRLGDKVTVKVASVSLDDRRINLTL
KGDVAQDRYSRRRAPKKGSGKSEHAPASVRSQLKAGKVPGKKSHSDDKPKGKKKPANKDK
GKPANKSATKPADKKAVDTAVKKKPKKKAVKKPKRAGKNARKSTSPGADNT
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccaagatccaaatctcagtcgagaacaagaaaagtacgaaaacccagtccct
agtcgtgagtttatacttactcaccttcaagagcgttcaaaacctgctaactacgcgcaa
ttatgtgaagaactagcagtaaacgatgacgaacgccaaatagcatttaaacgccgcctt
cgcgctatggagcgtgacggacagctgtattttaataaatttaaatgctatgccctaatt
gacgaagccggtttaaccaaaggcaaagtaataggccacagagacggttttggcttttta
gaagttgaaggcgagagtaaagattggtttattgctaagcaccaaatgaatatggtgtta
catggcgacattgtactagctaaaggcactaaacgtggctctggctcaaaatgcgatgca
cgtattataaaagtgcttactaacgagcgcgcgccaattgttggccgttactttgttgag
catggtgttgccgttgtggtagctgaagacccgcgcataacgcaagatataatgatttta
ccaggcaacgaaaacggtgcccgccataaccaaatggtgcaggttaaaatcactcaaaat
ccaagccgtaacatgaacgcggtaggtaaaattattgatgtacttggtgagcatttagcc
ccaggtatggaaattgaagtcgcactgcgcaatcacgatattccacatgtatggccagaa
gaagttgaagcacaagttgctcacctaggtgaatttgttgaagacgctgacaaaaaaggc
cgcgtagatttacgtgacttaccacttgtaaccattgatggcgaagacgctcgcgatttt
gatgacgccgtatactgtgaacctaaaaaatcgggtggctggcgcttatgggttgccatt
gccgatgtatcgcattacgtaggaatgaacacgccgcttaacaaagaagcaattttgcgt
ggtaactcagtgtatttccctgagcaagtaattccgatgctaccaaaagtgctttctaac
ggattatgttcgcttaatccaaaagtagatcgcttatgtatggttgccgaaatgaccgta
tcgagcgcgggtaaactttcgggctataagttttacgaagcgataatgaactcgcatgca
cgtttaacttacaccaaagtaaatgccattttacaaaacgacgaaaaactacgcgaagaa
tactcagccgtagtgccacatttaactgacttacagcaaatgtatatggcacttaaagct
gcacgccaagaccgtggtgccattgagtttgaaaccctagaaacacgttttgtatttaac
gctcagcgtaaaatagaatcaatagtgcctgttattcgtaacgacgcgcacaaactgatt
gaagaatgtatgattttagccaacgtatcggcggctaaaattcttgaaaagcacgaagca
agcgcgctttatcgtgtgcatgacgaaccagacagcgaaaaactaggtaactttactaag
tttttaggcgagttaggtatcgaaagtacattaagcgacgagccaacgccaaaagaaata
acccaagtattagcgcgactaggtgaccgcccagaagccgagcttattcaaactatgcta
ctgcgttcaatgaaacaagctgtatatcagccagataacattggtcactttggtttagcg
ttatcggcttatgcgcattttacatcgccaatacgtcgttacccagatttagtagtacat
cgtgctattaaagcagttataaaagcacaaggtcagcaaacgtctggcgaatacgcttat
accgacgacgaagttgatcaacttggtgagcagtgttctaccacagagcgccgcgccgat
gatgcaactcgcgaagtagcggattggcttaaatgtgagtttatgcaagatcacgtaggt
gacgagtttgacggtgttatttcatcggtcactaactttggtttgtttattcgtttagac
gatttacaaattgatgggcttattcatgttactaatttaggcgatgagttttttgcgcat
gatgctgcaaaacacaccctaataggtgagcactctcacaaagtttatcgccttggcgat
aaagtaacagtaaaagttgcgtcggttagtttagacgatcgccgtatcaacttaacgctt
aaaggcgatgttgcacaagacagatactcacgtcgtcgtgcgccaaaaaaaggctcaggt
aaatctgagcatgcgccagcaagtgtgcgttcgcaattaaaagcaggcaaagtaccgggt
aaaaagtcgcacagtgatgacaaaccaaaaggtaaaaaaaagccagcaaataaagataaa
ggcaagcctgcaaataagtctgcaactaaacccgcagataaaaaagcagtagacactgcc
gtaaagaaaaagccgaagaagaaggctgttaaaaagcctaaaagagctggcaaaaatgcc
cgtaaaagtactagcccaggagcagataatacgtga
DBGET
integrated database retrieval system
