Pseudoalteromonas arctica: PARC_a1392
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Entry
PARC_a1392 CDS
T05179
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
part
Pseudoalteromonas arctica
Brite
KEGG Orthology (KO) [BR:
part00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
part03019
]
PARC_a1392 (hrpA)
Enzymes [BR:
part01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PARC_a1392 (hrpA)
Messenger RNA biogenesis [BR:
part03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PARC_a1392 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
UvrD-helicase
ResIII
Cas3-like_C_2
NTPase_1
AAA_25
T2SSE
NACHT
AAA_23
HA2_N
DUF3405
SRP54
DUF6139
Baculo_LEF-11
Motif
Other DBs
NCBI-ProteinID:
ATC86015
UniProt:
A0A290S2V1
LinkDB
All DBs
Position
I:1352459..1356346
Genome browser
AA seq
1295 aa
AA seq
DB search
MVNLGQLFGELKTCLKKDQFIFKKRLHGVKKITDENKHANALEKIAADITRSQELRDKRL
AGLPKVTYPEQLPVSQKKETIKDAIANNQVIIIAGETGSGKTTQIPKMCLELGRGVDGLI
GHTQPRRLAARTVANRIAEEMKCELGQQVGFKIRFSDQVSNNTYVKLMTDGILLAEIQQD
RFLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKIIITSATIDPERFSKHFDDAP
IIEVSGRTFPVDVRYNPTADINKEDMEAEGDQLQGIFDAVDELCAEGPGDILIFLNGERE
IRDTADALSKRNLKHTDVLPLYSRLSNAEQNRIFAPHSRRHIILSTNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRMGRCGRVEAGICIRLYSEDDFLSRPE
FTDPEILRTNLASVILQMLALGLGDMAQFPFVQAPDSRNISDGLSLLEELQAVKPDKRDS
KTSLTASGRELSRLPVDPRLAKMVLTAHKLGALREVIVIVAALSIQDPRERPQEKRAAAN
EKHGRFDDPDSDFIAFLNLWNYLEEQQSELTNGQFRKLCQKDFLAYMRLREWQDIVYQIS
TVCNEMGMKATSQAADGELVHKALLSGMLSHIGFKDEKQIYKGARNSQFHIFPGSGLFKK
SPKWIMSAELVETSKLYARTNAKIDINWVEPLAQHLVKRSYTEPHWEKKPGAVIAFEQQT
LYGLLVVNKRRCVYSNIDPKVSRELFVRTALVEQELGLNEGFLAFNSELIEDIQVLENKS
RRRDILVDEQTLFEFYDKKIPKEINNRAAFLKWYKTQKQQNKHYLHMTREELMQHGASNI
TEFDYPDTWQQDNIILPLAYHFDPGQAVDGVAVQIPVALLNQVQESGFDWHIPAFRHELI
SGLIKSLPKSLRRNFVPAPNYADAVLAAIEPMQGSLIDALAMRLLRMTGVRVDAEAWDLT
ALAPHLRLQFEVRDEHDKLLARGLDLAKLKAELQGEVTETLSKVADKGIEKSDLTQWDFG
ELPASYVKKQGQYEIKAYPALVDKKSAAAVELFDSEAKAQQAHQQGLRRLVLLNVPSPIK
YLQQNLPNKAKLGLYFNPFGKIADLIDDCIAAGVDSLLVKHGDIRDEKVFETVKEQIRGE
LGDAVVSIATQVEQVLSIAHALHKKMKGRVDLTMITAHGDIKSQLESLIFKGFVSAHGAD
KITDLIRYLKAIQKRLEKLPVDPNRDRLCVLELDKVAQEYKKVVNKTPKGLPIPQEVTAI
FWMQQELRVSLFAQTLGTPYPISAKRVLNAIKEIE
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaacctaggtcagttgtttggcgagctaaaaacgtgcttgaaaaaagatcaattc
attttcaaaaaacgcttacatggcgtaaaaaaaataacagatgaaaacaagcatgccaac
gcgcttgaaaaaatagcggctgatataacccgtagccaagaattacgcgataaacgctta
gcgggccttcctaaagtgacttaccctgagcaattgccagtaagtcaaaaaaaggaaaca
attaaagacgccattgcaaataaccaagtgattattattgcaggtgagacgggctcaggt
aaaacaactcaaatacctaaaatgtgtttagagcttggccgtggtgttgatggcttaata
ggccatactcaaccacgccgattagcagcgcgaacggtggctaaccgtattgctgaagag
atgaagtgcgaacttggtcagcaagtcggttttaaaattcgttttagcgatcaggtttct
aataatacgtacgttaaactaatgactgacggtattttactggcagaaattcagcaagat
cgatttttaaaccaatacgacaccataattatagatgaagcgcacgagcgtagtttaaac
atcgactttattttgggttacttaaaaaacctacttccaaaacgtcccgatttaaaaata
ataattacgtctgcaaccatcgatcctgagcgcttttcaaagcattttgatgatgcgccc
attatagaagtatcgggtcgtactttccctgttgatgtgcgttacaacccaacggccgat
attaataaagaagatatggaagccgagggcgatcagctacaaggtatttttgatgctgtt
gacgaactgtgcgcggaaggtcctggcgacatactgatatttttaaacggtgagcgtgaa
atacgcgataccgcggatgcacttagcaagcgtaatttaaaacacactgatgtattgcca
ctttactcgcgcttatctaacgcagagcaaaaccgtatatttgcgccacattctcgtcgt
catattattttatcgaccaacgtagccgaaacgtcactaaccgtgcctggtattcgttat
gtaatagatccaggtactgcgcgtataagccgctacagttatcgtacaaaagttcagcgc
ctgccaatagaacctatatcgcaagcaagtgctaatcagcgtatgggtcgttgtggacgt
gttgaagcgggtatttgtattcgcttgtactctgaggatgattttttatcgcgcccagag
tttaccgaccctgaaatactgcgtactaatcttgcctcagttattttgcaaatgttggca
ctcgggcttggtgatatggcgcaatttccgtttgtgcaagcgccagatagccgtaatata
agtgatggtttatcgttattagaagaactacaagcagtaaaaccagacaaacgtgatagt
aaaacgagtttaaccgcttcaggtagagaactcagccgattaccggtagaccctcgttta
gctaaaatggtgctcacagctcacaaacttggcgcattgcgtgaagtgattgttattgtg
gcggcgttgtcgattcaagatccacgcgaacgcccgcaagaaaaacgtgctgcagctaac
gaaaaacacggtcgctttgacgacccagattcagactttatcgcttttttgaacttatgg
aattacttagaagagcagcaaagcgagctgactaatggccagtttagaaagctgtgtcaa
aaagatttcctagcctatatgcgcctgcgtgagtggcaagatattgtttatcaaataagt
actgtgtgtaacgaaatgggtatgaaggcaaccagccaagcggctgatggcgaactcgtt
cacaaagcgttattaagcggaatgctgagccatattggctttaaagatgagaagcaaata
tacaaaggcgcacgtaatagtcagtttcatatttttccgggttcaggtttatttaaaaag
agccctaaatggattatgtcggcagagctggtagaaaccagtaaattatatgcccgcaca
aatgcaaaaatagacattaactgggtagaaccattagcacagcatttagtgaaacgcagc
tatacagagccacactgggagaaaaagccaggtgcggtaatcgcgtttgagcagcaaact
ttgtatggcttacttgttgtaaataaacgccgctgtgtttatagcaatattgaccctaaa
gtgagccgagagctttttgtgcgcactgcattagttgagcaagagctgggcttaaacgag
ggctttttagcatttaacagtgagcttattgaagatattcaagttctggaaaataagtcg
cgtcgtcgtgatattttagttgatgagcaaacgttatttgagttttacgataaaaaaata
cccaaagaaattaataaccgcgctgcatttttaaaatggtataaaacacaaaaacaacaa
aataagcattacctacacatgactcgtgaagagctaatgcagcatggtgcaagtaatatc
actgagtttgactaccctgacacatggcagcaagacaatattatactgccgcttgcttat
cattttgacccaggccaagcagttgatggcgttgcggtacaaataccggtagcactttta
aatcaagtacaagagagtggttttgactggcatatacctgcatttagacatgagctaata
agtgggcttataaagtcattacctaaatcgcttcgccgtaattttgtgccagcaccaaat
tacgcagatgcagtacttgcagctattgagccaatgcaaggtagcttaattgatgcttta
gctatgcgcttattaagaatgacaggtgtgagagttgatgcagaagcgtgggatttaacc
gcgcttgcaccgcatttacgattgcagtttgaagtacgtgatgaacacgataagttactt
gctcgtggacttgatttagccaaacttaaagcagagctgcaaggtgaagtaaccgaaaca
ctgtctaaagtagccgataaaggcattgaaaaatcagacctaacacaatgggactttggt
gagctgccagcgtcatatgttaaaaaacaaggtcaatacgaaataaaagcataccctgcg
ctggtggataaaaaatcagccgctgcagtggagctttttgatagtgaagcaaaagcgcag
caagcgcatcaacaaggtttgcgccgtttagtattgttaaatgtgccgtcgccaattaag
tacttacaacaaaacttaccgaataaggcaaagctgggtttgtactttaacccatttggt
aaaatagctgatttaattgatgactgtatcgccgcaggtgttgatagcttattagtgaaa
cacggcgatatacgcgatgaaaaagtatttgaaacagtaaaagagcaaatacgaggtgag
ctcggtgatgccgttgtatcgattgcaacgcaagttgagcaagtattaagtattgcgcac
gcactgcataaaaaaatgaaagggcgcgttgatttaacgatgataaccgcgcatggcgat
ataaaatcacagcttgagtcacttatatttaaaggttttgtgagcgcgcatggcgcagat
aaaataacggatttaattcgttatttaaaagcgattcaaaaacgtttagagaagctgcct
gtggatccaaatcgtgataggttatgcgtactagagttggataaagttgctcaagagtac
aaaaaagtagttaataaaacgcctaaaggcttgcctattccacaagaagtaaccgctatt
ttttggatgcaacaagagcttagagtgtcgctatttgctcaaacgcttggaactccttac
ccaatttcggctaagcgagtacttaatgcgataaaagagatagaataa
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