Pseudoalteromonas arctica: PARC_a2438
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Entry
PARC_a2438 CDS
T05179
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PARC_a2438 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
part03019
]
PARC_a2438 (rne)
03009 Ribosome biogenesis [BR:
part03009
]
PARC_a2438 (rne)
Enzymes [BR:
part01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PARC_a2438 (rne)
Messenger RNA biogenesis [BR:
part03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PARC_a2438 (rne)
Ribosome biogenesis [BR:
part03009
]
Prokaryotic type
rRNA processing factors
PARC_a2438 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATC86928
UniProt:
A0A290S450
LinkDB
All DBs
Position
I:2356281..2359529
Genome browser
AA seq
1082 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GADRHGFLPLKEIARTYFPAGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKEALGRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWEAIRQAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAARPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETP
HYEVMRLRKDETLETVSYGQVVAPEPEAFEMSKSPSAPVREEPMLKGVVMPSTSAPQAAP
TPVAQPVVTETKTEGGLFEAITKWFKSLFASETVEEKKEAVEKEQQEARNNARRGNDNRR
RNNNQRRRNNNPRTNKPRNERPAAEEEVKTDSPAATSTETQERNENRNKRRRNPNSRKRP
EHKSEEKDQVKTEAPVKAEVEVETDSKPAQAVEPKEQKPKVRRQRRNIRKKVRLQDENAE
QANSTEQTPEQAVVTDTPQVQEQAPVVEKQTQAPAEKTAHIKEEKVDVVDSNDEAATTED
EQEQTRTRSRRSPRHLRASGQRRRRPEGEAEVKSDEAPAFVPVADQAAAEYEAELKAKSE
ETPVDAAQQIEQAVAVEDLAKVEAVEEPAKVETPVATEEPAKVETPVVTEEPAKVEAPVA
TEEPAKVETPVVTEEPAKVETPVVTEEPAKVETPVVTEEPAKVETPVVTEEPAKVETPVV
TEEPAKVETPVVTEEPAKVETPVVTEEPAKVETPVVTEEPAKVEAKVKTEKSAPHVKTAV
TQGSASAPMAQPTPVADSEVKHTSVAMAHDKRELVPDSGLRAGSIKPAGRASSAMTKTLS
VD
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcaacgcagcaagaagaaatgcgcgtagcactggttgat
ggccagcgcctttatgatttagatatcgaaagcccaggtcacgaacagaaaaaagccaat
atttataaaggcaaaatcactcgcattgaaccatctcttgaagcagcatttgttgattac
ggtgctgaccgccatggtttccttcctttaaaagaaattgcccgtacttacttccctgca
ggttacacttttcatggtcgccctaacattcgcgacgtgatcaaagaaggtcaagaagtt
atagtacaagttgataaagaagagcgtggccaaaaaggcgctgcgttaactacttttatc
agtgttgctggtagctacttagtacttatgcctaacaacccacgtgctggcggtatttct
cgtcgcattgaaggtgatgaacgtactgaacttaaagaagcattgggtcgtttagaactt
cctaaaggtatgggcttaattgttcgtacagcgggtgttggtaaatcgtttgaagaatta
aactacgatttaaaagcattattagtacattgggaagcaattagacaagcagccgatagt
gctaaagcgccatttttaatacaccaagaaagcaatgtaatattccgtgcgatacgcgat
tatttacgtcgtgatattggcgaaattttaattgataaaccacgtgtttttgaagaagct
aaagcgcacattgagcgttttcgtcctgactttatgagccgtgttaagctttatcaaggc
gacactcctttatttacgcattaccaaattgaaagccaaattgagtctgccttccagcgt
gaagtacgtctgccttctggtggttcaattgtaattgacccaactgaagcactaacgtct
atcgatatcaactcgtctaaagcaactaaaggcggcgatattgaagaaacagcacttaat
actaacttagaagcggccgatgagattgcacgtcaattacgtctgcgtgacttaggcggt
ttaattgtaatcgactttatcgatatgacgcctccacgccatcagcgtgaagtagagaat
cgtttaaaagatgctgctcgtccagatcgtgctcgtgttcaaattggtaaaatctcgcgc
tttggtttacttgaaatgtcgcgtcagcgtttgcgtccttcattaggtgaagcaagccaa
ggcccatgcccacgttgtagtggacaaggtactattcgttcaaacgaatcaattgcactt
tctattcttcgtttaattgaagaagaagcaattaaagacaacacagcacaagtaaatgca
caagtgcctgttgccgttgccgcttatttattaaatgagcaacgtcgtagtgttcatcgc
attgaaaaacatcataaatgtgacgtagtgattattcctaatcaacatatggaaacacca
cattacgaagttatgcgtttacgtaaagacgaaactcttgaaacggtaagttacggacaa
gttgttgcgccagaacctgaagcatttgagatgtcaaaatcaccaagtgcaccagtacgt
gaagagccaatgctaaaaggtgttgtaatgccttctacatcggctccacaagcagcgcct
acaccagtagctcaacctgtagtaacagagactaaaactgaaggtggcttgtttgaagca
atcactaaatggtttaaatcgttatttgcaagcgaaacagtagaagagaaaaaagaagct
gtagaaaaagagcagcaagaagcgcgtaataacgctcgccgtggtaacgataatcgtcgt
cgtaataacaaccaacgtcgtcgtaataataacccgcgcactaataaaccacgcaatgag
cgccctgcagctgaagaggaagttaaaacagactcaccagcagcaacaagtaccgagact
caagagagaaacgagaaccgcaataagcgtcgtcgtaaccctaactctcgtaagcgccca
gagcataaaagcgaagaaaaagatcaagttaaaactgaagctcctgtaaaagcagaagta
gaagtagaaactgattctaagccagctcaagctgtagagcctaaagagcaaaagcctaaa
gttcgccgtcaacgtcgtaacatacgtaaaaaagtacgtctgcaagatgaaaacgctgag
caagctaactcaacagagcaaacacctgaacaagcggtagttactgacactccacaagtt
caagagcaagcacctgttgtagaaaagcaaacacaagctccggcagaaaaaacagctcac
attaaagaagagaaagttgacgttgttgattctaacgatgaagcagcaacgactgaagac
gagcaagagcaaacacgtacgcgttcacgccgttctcctcgtcatcttcgtgcatcaggt
caacgtcgtcgacgtcctgaaggtgaagcagaagttaaatctgacgaagcccctgcattt
gttccagttgctgatcaagctgctgcagaatatgaagcagagcttaaagctaaatctgaa
gaaacacctgtagatgcagcgcagcaaattgaacaagccgttgcagttgaagacttagca
aaagttgaagctgtagaagagccagctaaagttgaaactccagtagcaactgaagagcca
gctaaagttgaaactcctgtagtaactgaagagccagctaaagttgaagctccagtagca
actgaagagccagctaaagttgaaacgccagtagtaactgaagagccagctaaagttgaa
acgccagtagtaactgaagagccagctaaagttgaaacgccagtagtgactgaagagcca
gctaaagttgaaactccagtagtaactgaagaaccagctaaagttgaaactccagtagta
actgaagagccagctaaagttgaaacgccagtagtaactgaagagccagctaaagttgaa
acgccagtagtaactgaagagccagctaaagttgaaacgccagtagtaacagaagagcca
gctaaagttgaagcaaaagtgaaaactgaaaaatcagcaccgcatgttaaaacagcggtt
actcaagggtctgcaagtgcgccaatggcacagcctactcctgtagctgatagcgaagta
aaacatacatctgtagcaatggctcacgataaacgtgaactagtaccagacagtggttta
cgtgcgggttctatcaaacctgctggtcgtgcaagttctgcaatgactaaaacattgagt
gttgattaa
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