Pseudoalteromonas arctica: PARC_a2463
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Entry
PARC_a2463 CDS
T05179
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PARC_a2463 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
part03400
]
PARC_a2463 (mfd)
Enzymes [BR:
part01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PARC_a2463 (mfd)
DNA repair and recombination proteins [BR:
part03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PARC_a2463 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ATC86949
UniProt:
A0A290S4V5
LinkDB
All DBs
Position
I:2380321..2383794
Genome browser
AA seq
1157 aa
AA seq
DB search
MAFEQWAALPWVKSQKDKIQWGQLSGSGLSIAIAEGVKQQDNLVLIVTPDTPSALRLETE
LEYLLPDNPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKKEQQSVLIVPISTLMLRT
APASFIYGSTINFKVGDKLDTHNFRDNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSP
HPFRLDFFDDELDTIRLFDVETQRSDEKVDKIELLPAHEFPTNDADIERFRISYREKFGA
SSQQDSVYMQVSKGNWPAGIEYYMPLFFEKLATIFDYLPDTTTVMQLGDLEHAADNFWHD
VNVRYENRRVDPLRPLLEPNALYQPIEELFSNLGNFARIRLSLAKLGTKAGNKNLSVSEL
PAIRIDHKQHEPYAAFINYVAEQKKKKGRILLSVESDGRRESLLSILKPSGLKFKEFETL
EQFTKSASDVGLIVSPLEQSVVLGTKPSLSIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELKEGQPVVHLDHGVGRYQGLQTIDAAGVITEFVTITYASEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWEKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFTLDAPAYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDDKQ
VAILVPTTLLAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLEKMANGKLDIVIGTH
KLIQHDIKFNDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDVELIREAVLREIKRGGQVYFLHNNVETIDRVAQEISE
WVPEASVTSAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNALREGKEPTLENLLKKQTEVDLKLAAL
LPDDYIHDVNARLGMYKRVASCANLDDMDELQVELIDRFGLLPDAAKNLFSLQLLKMQAS
NLGITKIEANPKGGYFEFSQDTKVNPSFIIGLIQSAPKVYKMDGANKLRFAISEANARER
LKMVTAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgagcaatgggcagccttgccttgggtaaaatctcaaaaagataaaattcaa
tggggccagctaagcggaagtggtttaagtattgccattgctgaaggcgttaaacaacaa
gacaacttagtcttgattgttacgcctgatacaccaagcgcactgcgccttgaaacagaa
ttagaatatttattacccgataacccagtaatggtatttcctgattgggaaactctgcca
tacgatcacttttctccccatcaagatattatttcagcccgtttagccactttaaacacc
ttaaaaaaagaacaacaaagtgtgttaattgtgcctatatcaactttaatgttgcgcaca
gccccggcctcgtttatttacggttcaacaataaactttaaagtgggcgacaagctagac
acacataactttcgtgacaacctagagcaagctggttatttaaatgttcaacaagtaatg
gagcacggcgaatacgctatacgcggctctatcgttgacttatatccaatgggcagcccg
catccatttagactcgatttttttgatgacgaactcgacacaattcgcttatttgatgta
gaaacgcagcgttctgatgaaaaagtagataaaattgagctacttccagcgcatgaattt
cctactaacgacgctgatattgaacgttttagaataagctaccgcgaaaaatttggtgca
agctcgcagcaagactctgtatacatgcaagtaagcaaaggtaactggcctgctggtatc
gaatactacatgccgttgttttttgaaaagctagcgactatttttgactacttgccagat
acaacaactgttatgcagctgggtgatttagagcacgcggcagataacttttggcacgat
gtaaatgtacgctatgagaaccgcagagttgacccacttcgtccattacttgaacctaat
gcgctttatcagcctattgaagagctgttttctaatttaggcaattttgcacgtattcgt
ttatctcttgcaaagcttggtactaaagcgggcaataaaaacttaagcgttagcgagctg
cctgctattcgaattgatcataagcagcatgaaccttatgccgcgtttataaattatgta
gcagagcaaaaaaagaaaaaaggccgtattttattaagtgttgaatccgatggtcgtcgc
gaatcattactgagcattctaaagccaagcggtttaaaatttaaagaatttgaaacactc
gaacaatttacaaaaagcgcgagtgatgtaggtttaatagtaagcccgcttgaacaaagt
gtcgtacttggtactaaaccaagcctttctattattaccgagcaagaactgcttggtata
aaagtatctcagcgcagacgccgcaagcacaagtacgaagccagccaagatgcgctaatc
cgtaatttagcagagctcaaagaaggtcaacctgttgtgcatctcgatcatggtgttggc
cgttatcagggtttgcaaacaattgatgctgcaggtgtaattactgagtttgttaccatc
acatatgcaagtgaagctaaattgtacgtgccagtgtctgcactgcatatgcttagccgc
tactcgggtggcgaagaagccagcgccccgctgcataagcttggctcagatgcatgggaa
aaagctaaaaaacgagcggctgaaaaagtccgcgatgtagcagccgaattactcgacatt
tatgcacagcgccaagcaaaacccggtaataagtttactctagacgcccctgcatatcgc
caatttagcgatagcttcccgtttgaagaaactgacgatcagcgcaacgccatagaagcg
gtgttaggtgatatgcaatcaaagcaagccatggaccgcttagtgtgtggtgacgtaggc
tttggtaaaacagaagtggccatgcgcgctgcttttgtagcggttaacgatgataaacaa
gtggcaattttagtgcctaccaccttgctggctcagcagcactatgaaaactttaaagat
cgttttgctgattttcctattgaagttggtgtactttcgcgctttaactccactaaagag
caaaaagacacgcttgaaaaaatggcaaacggtaagctcgatatagttattggcacacat
aaacttattcagcatgacattaaatttaacgatttaggcttactcattgttgatgaagag
catcgctttggtgttcgccaaaaagagaaaattaaagccctgcgtgccgatgtagacata
ctcacactaactgcaacgccaataccgcgtacacttaacatggccatgagcggaatgcgc
gatttatcaataatcgcaacgccaccggctaaacgtttagcggtaaaaacctttgtacgc
caacgcgatgtagaactaatacgcgaagctgtactgcgtgaaattaaacgcggtggccaa
gtttactttttgcataacaacgtggaaactattgaccgtgttgcgcaagaaattagtgaa
tgggtccctgaagcaagcgtcacctcagcccatggtcaaatgcgcgagcaagagcttgag
caaataatgactgacttttatcatcaaaaatacaacgtgctggtatgtaccacgattatc
gagaccggtattgatgtaccgacagccaacaccattattatggatagagcagataaactt
ggccttgcgcaattacaccaattacgtggacgagttggtcgaagccatcatcaagcgtat
gcctatttactcacaggtgaccctaaagcactctctaaagacgcgagtaaacgcttacaa
gcaatcgaatcattggaagatttaggcgcgggttttgcccttgctacacacgatttagaa
attcgtggcgctggtgagttacttggcgacgatcaatcaggtcaaatgcaaacaatcggc
tttagtttatatatggaaatgcttgagcaagccgtaaatgcgctacgtgaaggaaaagag
ccaacgcttgaaaatctacttaaaaaacaaaccgaagtagatttaaaactggctgcacta
ttacctgatgattacatacacgatgttaatgcacgcctaggtatgtacaagcgagttgct
agttgtgctaaccttgatgatatggatgaactacaggtagaacttatagaccgctttggt
ttactgcctgatgccgctaaaaacctatttagcctacaattattaaaaatgcaggcaagt
aatttagggataacaaaaattgaggcaaatccaaaaggtggttactttgagtttagccaa
gatactaaggttaaccctagcttcatcattggtttgatacaaagtgcgcctaaggtgtac
aaaatggatggcgcaaataaactgcgctttgcaattagtgaagctaacgctcgcgaacgc
ttaaaaatggtcactgcaatgattgcagatttcgaaaaaaaggttagccattaa
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