Pseudoalteromonas arctica: PARC_a2486
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Entry
PARC_a2486 CDS
T05179
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PARC_a2486 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
part03400
]
PARC_a2486 (recB)
Enzymes [BR:
part01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PARC_a2486 (recB)
DNA repair and recombination proteins [BR:
part03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PARC_a2486 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ATC86970
UniProt:
A0A290S6X5
LinkDB
All DBs
Position
I:complement(2407060..2410638)
Genome browser
AA seq
1192 aa
AA seq
DB search
MQALNPLTMPLIGQSLIEASAGTGKTYTITGLYLRYLLGMQIEGELNTPLSVEQILVVTF
TDAATQEIKDRVRSRIIAARDALLGQDPNDELIEGVIAKIDDKHRAFDLLDAAAKSMDEA
AIFTIHGFCQRMLKQHAFESGVAFNLEFILDERDILLETIKDFWRAFVYPLNKERTDAIL
DVFAAPEALFAQVASILNKANAHITPQINLDDVWRARDEYITRVPAFKKAVLEQEFIGAI
KSSGLSGSKTPARKGSLGALEAFCLGGDLFFEFGTNKYSFEVWSTENLSDVSNYKKNQPL
FVHPLLSQFDELAALNNTINQGLKIAVVQHAARWVKAAIVKRKQEQSVITPDDLLTNLHS
ALNNEQGDVLAQKIAQLFPVAMIDEFQDTDPIQYGIFSKIYGQQNTTLAMIGDPKQAIYG
FRGADVFTYIGAKEAVQTDQQFTLGTNFRSSTDIVNSVNSLFGKHANSFIYNDAIPFNAV
AAKGKKAEDSFLIDGKPATAFEFNVFVDEAADEKNKPTNKGVGQAHLATHFANKIVTLLE
KAKQGDACIGSTPVSAADICILVRDRVEAQIMKKALSEAKIASVYLSRESVFSQELSHHL
LNFLTALHGQYDESLLRGVLAGPLFCLSYNEIHALADDENKWQDYLNFFAQLSHIWNKQG
AMAMLERLMSHNQLSAKWQGLGYNVERWLTDFRHLGEILQQKQIELEGTLRLLRWFAQKV
SQQDGETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASGYRETKEALYHNNGKLVYD
LSKDEDALQKAEQERLAEDLRLLYVALTRAVHFCALGVYNIGQGQSSRLAMQSSALGHVL
FAGLELASSQTWRTHLSEFCDANSAMSYQQFTSQTLLEQGKLCFSNSKIAQQTLSVNRVT
ANIERNWRATSFSALSFKKHSDQLAPGRSDEDHEKDEFAVQEDELPSPYSFPKGPKPGSC
LHEIFEQIDFISPIVHSTNTEQNLSEVVKRSLEKYHISEQWREVAEKWVLDVLACPLDKS
SLENSLLSLGVLTPSDCLVEMEFNLPLESLSAPKLNEMLVKHFGFTQSKLEFSQVKGLLK
GFVDLIFCYQGKYYILDYKSNYLGSTPADYEGDMLEQAMSSHQYHLQYLIYTVALHRLLK
QRIADYSIETHLGGVYYTFLRGMPAGQGVYFKKLTVEQVTILDGLFSQGAML
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgcttaatcctcttactatgccgctcattggtcaaagtttaatagaagccagt
gcgggtactggtaaaacttatacaattacggggctgtatttacgttacttactaggtatg
caaatagaaggtgagttaaatacgccgctcagtgttgagcaaattttggtagtaaccttt
accgacgctgccacccaagaaattaaagaccgcgtgcgcagccgaattattgctgcgcgc
gacgcattgcttgggcaagacccaaacgacgaactcattgaaggcgtaattgccaaaatt
gatgataagcaccgcgcctttgatttactcgatgcagctgctaaatcaatggacgaagcc
gctatttttactattcatggcttttgtcagcggatgctaaagcaacatgcgtttgagtcg
ggtgtggcgtttaatctagaatttattttagatgagcgcgacatattactcgaaactatt
aaagatttttggcgggcatttgtatacccacttaataaagaacgcaccgatgctatttta
gatgtatttgccgcacccgaggctttattcgctcaagtggcgagcattttaaacaaagct
aatgcgcacattacgccccaaataaatttagatgatgtatggagagcccgtgacgagtac
ataacccgtgtgcctgcatttaaaaaagcggtgttagagcaagagtttatcggtgctatt
aaaagctcgggtttaagcgggtctaaaacgccagcacgaaaaggcagccttggtgcgctt
gaggcattttgtttaggcggcgatttgttttttgaatttggcactaacaagtattcgttt
gaagtgtggagtacagaaaacttaagcgatgtaagcaattataaaaaaaatcagccatta
ttcgtgcatccattactgagtcagtttgacgagcttgccgcccttaataacaccataaac
caagggctcaaaatagcggttgtacaacatgcagcacgctgggtaaaagccgcaatagtt
aagcgcaagcaagagcaaagcgttatcaccccagatgacttattgaccaatttacacagt
gcgcttaataacgaacaaggcgacgtactagcgcaaaaaattgcgcagttgtttccggtt
gccatgattgatgaattccaagataccgatccgattcagtacggtatttttagtaaaatt
tatgggcaacaaaataccacgcttgccatgataggcgaccccaagcaggctatttatggc
tttaggggcgcagatgtttttacgtacattggtgcaaaagaagctgtacagactgatcag
caatttacgctggggactaactttcgctcaagcactgatatagtaaatagcgttaatagt
ttatttggcaaacacgctaacagctttatttataacgacgctataccgtttaacgcagta
gctgctaaaggtaaaaaagcggaagactcttttttaattgatggcaaacccgcgaccgca
ttcgaatttaatgtatttgtggatgaagccgcagacgaaaaaaacaaaccaaccaacaaa
ggtgtagggcaagcacatttagccactcactttgctaataaaatagtgaccctgcttgaa
aaagcaaaacaaggggacgcgtgtattggcagtacccctgtaagcgctgccgatatttgt
atattagtgcgcgaccgtgttgaagcgcaaataatgaaaaaagcgcttagcgaagccaaa
atagccagcgtgtatttatcgcgcgagagcgtttttagccaagagcttagccatcaccta
cttaactttttaacagcgctgcatggtcaatatgacgagtcattgctgcgcggtgtttta
gcgggtccattattttgtttaagttataacgaaatacatgcactcgccgatgatgaaaat
aaatggcaagactacttaaacttttttgcacaacttagccacatttggaacaagcaaggc
gctatggcaatgcttgagcgcttaatgagccataatcagcttagcgctaaatggcaagga
ttgggatataacgttgagcgttggctgacggactttaggcacttgggtgaaatacttcag
caaaaacaaatagagcttgaaggcacgctgcgtttgctgcgctggtttgcacaaaaggta
agccaacaagacggtgaaacagtacaggtgcgcctagaaagtgacgccaacttagttaaa
attgtcactatgcatgcctcaaaggggcttgaataccctttggtatttatgccgtttgcc
agtggctatcgcgaaacaaaagaagcgctttatcacaataacggcaagctagtttacgat
ttaagtaaagacgaagatgcactgcaaaaagcagagcaagagcgcttagctgaagattta
cgcctgctgtatgtagcacttactcgcgctgtgcatttttgtgcgcttggtgtttataac
attgggcaagggcaaagtagccgcttagcaatgcaaagtagtgcactagggcatgtttta
tttgcagggcttgagcttgccagtagccaaacatggcgcacgcatttaagtgagttttgc
gacgctaatagcgcgatgagctatcagcaatttacctcgcaaacgttattagaacaggga
aagctttgttttagtaatagtaaaattgcgcagcaaacattaagtgttaatagagtaacg
gcaaatattgagcgtaactggcgagcaaccagctttagtgcgttgagctttaaaaagcac
agcgaccaattagccccagggcgaagtgatgaagatcacgaaaaagacgagtttgcagtg
caagaggacgaactgccatcaccttatagttttcctaaagggccaaagccgggtagctgt
ttgcatgaaatatttgaacaaatagattttattagcccaatagttcactcaactaatacc
gagcaaaacttatctgaggtagttaagcgcagtcttgaaaagtatcacataagtgagcaa
tggcgagaagtggctgaaaagtgggtactcgatgttcttgcgtgtcccctagataaaagc
tctctagaaaacagccttctttcattaggtgtgcttacaccaagcgactgcctagtcgaa
atggagtttaatttaccacttgagagcttaagcgcacctaagctaaacgaaatgctggtt
aaacattttggctttacgcaaagtaagcttgaattttcacaagtaaaaggcttgttaaaa
ggctttgtcgatttaatattttgctatcaaggcaaatattatattttagattataagtct
aattacttaggcagtacgccagctgattacgaaggcgatatgcttgagcaagcaatgagc
agtcatcagtatcatttacagtatttaatctacacggtagcgctgcatcgtttattaaaa
caacgtatagctgattactcgatagaaacccatttaggcggcgtgtattacacgttttta
cgtggaatgccggcagggcaaggcgtgtactttaaaaagctaactgtagagcaagtaact
attttagatggcttatttagccaaggagctatgctatga
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