Pseudoalteromonas arctica: PARC_a2763
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Entry
PARC_a2763 CDS
T05179
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PARC_a2763 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
part03019
]
PARC_a2763 (deaD)
03009 Ribosome biogenesis [BR:
part03009
]
PARC_a2763 (deaD)
Enzymes [BR:
part01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PARC_a2763 (deaD)
Messenger RNA biogenesis [BR:
part03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PARC_a2763 (deaD)
Ribosome biogenesis [BR:
part03009
]
Prokaryotic type
rRNA helicases
PARC_a2763 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
P-loop_SecA
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATC87214
UniProt:
A0A290S4X4
LinkDB
All DBs
Position
I:2694668..2696533
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AA seq
621 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSA
LRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKIVEEKRIEALQAKLTIALENKDITFFNEIATNMAEKLELPLESLA
GALLCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRNDRGGDRGRRNERGGERGGERA
ERKPRERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNHSTV
QLPQNMPKDVLDHFQKVFICKRPMGLTITQDQGPAEPRAERSERPAGDKKRTFSKDKDDS
QRGDKRTGPRKERRPVSFTAK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttgaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagctcaaacgggtacaggtaaaaccgcagcatttgca
ctgccattactaaataatattgacccgtctgtgaaacagccacagatccttgtactcaca
ccaacacgtgagcttgcgatccaagttgctgaggcattcgaacaatatgctaaacatgtt
cgtggtattgaagtattggcactatatggtggccaaagctacagtatccaattaagcgca
cttcgtcgtggcgctcaggttattgttgcaactccaggtcgtttaatcgatcacattaac
cgtggcactatcaagtttgatgctctacaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgtagaaagcatcatggaaaaaacaccgcgcgaaaag
caaacatgtcttttctctgcgactatgcctaagcaaattcaaaacatcagcagcaaatat
atgaacaatcctgaacaggttcatatttctgcgcgtaactctacagtatcatctgttgag
caagtgttttggaatgcaagcgtacataaaaataaagctattgttcgcttcttagaagct
gaacagtatgaaggtgctattgttttcgtacgtacgcgtaacgatacagtacaacttgct
gagttattagagcgcgaaggtttctctgctgctccacttaatggtgatatgaaccagcaa
gcacgtgaacgcactgtagaacgcttaaaaagcggcatgctaaatgttgttattgcaaca
gacgttgctgctcgtggtctagatgttgaccgcttaagcttagttatcaactacgatatc
ccacaagattctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagcaattttattcgtaaaacataacgaacgttatttacttaaaaatatcattcgt
catacgaagtctgaaattgcacaagttgaattaccaactgcaaaaatcgttgaagaaaaa
cgtattgaagcgttacaagcaaaattaactattgcgcttgaaaacaaagatattacattc
tttaacgagatagctactaacatggctgaaaaacttgaacttcctcttgaaagcttagcg
ggtgcgttattgtgtttagcacagcaacagtctccaattaaagttgaagaagttaagatt
caacctcgtgaacgtaacgagcgtaacgatcgcaatccacgtagtaacgaccgcaatgat
cgcggtggtgaccgtggacgtcgtaacgaacgtggcggcgaacgtggtggtgaacgcgct
gagcgtaaacctcgcgaacgtaacagccgtgatgcaggccctatggatacttaccgtatc
gaagtaggtcgtgaacacggtgttcaggttaagaatattgttggcgctatcgctaacgaa
gctgacatctcaagcaagtttattggtgatattcgtttacacgacaatcacagtacggtt
caattaccgcaaaacatgcctaaagatgtacttgatcatttccaaaaagtgtttatttgt
aaacgtcctatgggcttaacaattacacaagatcaaggccctgctgagccacgtgcagaa
cgctctgagcgtccagctggtgacaaaaagcgcacttttagtaaagataaagacgatagc
caacgcggtgataagcgtactggccctcgtaaagaacgtcgcccagtaagcttcacagct
aaataa
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