Pseudoalteromonas arctica: PARC_a3172
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Entry
PARC_a3172 CDS
T05179
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PARC_a3172 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
part03019
]
PARC_a3172 (pcnB)
Enzymes [BR:
part01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
PARC_a3172 (pcnB)
Messenger RNA biogenesis [BR:
part03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PARC_a3172 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
ATC87587
UniProt:
A0A290S7R4
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All DBs
Position
I:3107288..3108769
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AA seq
493 aa
AA seq
DB search
MLITSNSLYWAITAPFAVTFDCDAESITPSRRQTIISKLFQFCRQIIGPNTSAESASVSS
EPIVVTRGEHGISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDILLGQQPKDFDVVTNA
TPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVATMRGHHEAQEDKNQISQSSDEGQLLR
DNVFGSIEEDAERRDFSINALYYSIKDFSIHDYANGLAAIKAKQIELIGDPETRYREDPV
RMLRAVRFATKLDMSIAPKSEKPISELASLLDNIPPARLFEEILKLFLNGKAEANFLMLR
KYGLFRSLFPELDKILDKNPSGLEHTLIQQMFQNTDKRINADKKVTPAFIFAALLWFPLL
ERTKKIQSQEQLAEYDAFAQAMNKVLSDNSQHIAVPKRFTLGARDIWHIQHRLDKRAGQR
AYRLTQQPRFKAAYDFLLLRVDAGETQHTELAQWWTQYLSQDINGQKEMVKNLGHQGGPK
PRKRRRPTKKPAE
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgctaattacgtcaaacagcttgtactgggctataaccgccccatttgctgtaactttt
gattgcgatgcagagtcaatcacaccttctaggagacagactattatttccaagcttttt
caattttgccgacaaataatcggcccgaataccagtgccgaaagcgcttctgtaagcagt
gaacctattgttgtcactcgtggtgagcatggtatttctcgcaaacaatttagcccaaat
gcaatcaaagtattataccgcttaaaagacggtggctacgatgcctaccttgttggtggt
tgtattcgcgatatattgttaggccaacagccaaaagattttgacgtagttactaatgcc
acgccagatcaagtaaaaaaactatttagaaattgtcgccttattggccgtcgctttcgt
ttagcacatattgtatttggtcgtgaaattattgaagtggctactatgcgtggccaccac
gaagcgcaagaagacaaaaatcaaataagccaatcaagcgatgaaggccaattactacgt
gacaacgtatttggcagtattgaagaagatgcagaacgccgcgacttttcaatcaatgca
ctttattactcaatcaaagattttagtattcacgattacgccaacggcttagcggcaatt
aaagctaaacaaattgagctaatcggcgaccctgaaacgcgttaccgcgaagaccctgtt
cgtatgttacgtgcagttcgctttgctactaaacttgatatgagcattgcgcctaaaagt
gaaaagccaattagcgagcttgcaagtttgcttgataacattccgccagcacgtttattt
gaagaaattcttaagctgtttttaaatggcaaggccgaagctaactttttaatgctgcgt
aaatacggcttattccgctcactgtttcctgagcttgataaaatcttagataaaaatcca
agtggcttagaacacacgcttattcagcaaatgtttcaaaataccgacaaacgtattaat
gccgataaaaaagtaacaccagcgtttatttttgccgcactactttggttcccgctgctt
gaacgtactaaaaagattcaaagccaagaacaacttgcagaatacgatgctttcgcacaa
gcaatgaataaagtactaagcgataactcacaacacattgcggttcctaaacgctttact
ttaggtgctcgcgatatttggcatattcagcaccgtttggataaacgtgcaggccaacgt
gcatacagactaacgcaacaacctcgctttaaagccgcctacgactttttactcttacgc
gtagatgcaggcgaaacacagcatactgagcttgcccagtggtggacacaatacttaagc
caagatataaacggccaaaaagagatggttaaaaacttaggccaccaaggtggtcctaag
ccgcgaaagcgccgtcgacctactaaaaagccagctgagtaa
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