Pseudoalteromonas arctica: PARC_a3371
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Entry
PARC_a3371 CDS
T05179
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PARC_a3371 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
part03019
]
PARC_a3371 (recQ)
03400 DNA repair and recombination proteins [BR:
part03400
]
PARC_a3371 (recQ)
Enzymes [BR:
part01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PARC_a3371 (recQ)
Messenger RNA biogenesis [BR:
part03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PARC_a3371 (recQ)
DNA repair and recombination proteins [BR:
part03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PARC_a3371 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HssS_N
Helicase_Sgs1
zf-CXXC
DUF8380
Motif
Other DBs
NCBI-ProteinID:
ATC87755
LinkDB
All DBs
Position
I:3290310..3292133
Genome browser
AA seq
607 aa
AA seq
DB search
MNTSTPPSSTLVRKPETVLKQVFGYSEFRDGQKTVIDAAINGQDSLVLLPTGGGKSVCYQ
IPALVLEGVTIVISPLISLMQDQVSQLQALGVKAAYVNNSLAREEQQLVYQQLHQGQIKL
LYVAPEKVLQREFLERLSHLNVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMM
ALTATADKATRFDIVEQLKLQQPYIHTGSFDRPNIRYTIEEKFKPMVQLLRYLKEQKSQS
GIIYCTSRKRVDDIAEKIADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGM
GINKPNVRFVLHYDIPKSIESYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDE
QRRRVEEQRFNAMASFAEAQTCRRQILLNYFSEYQREPCGNCDICLNPPKSFDGTLVAQQ
ALSCVYRADQRFGLGYIVELLRGANTSRIRDNNHHELSTYGIGKDKSSEFWLSILRQLIH
QGLLSQDITQGASLRLTEAARAILKGEYALQLAEPRLQAKHVYQDKLAQFNYDKKLFARL
RALRKELADADDVPPYVVFNDKTLAEMAQLMPTNDSEFLKVSGVGFTKLNKYGGEFLTAI
RNYLATN
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaatacatcaacaccaccttctagcacccttgtgcgtaaacccgaaactgtcctcaaa
caagtgtttggctacagtgaatttcgcgacggccaaaaaacagttattgatgctgctatt
aacggccaagactcgcttgtattgctccctactggcggcggaaaatcggtttgctatcaa
atacccgctttagtgcttgaaggcgtcactattgttatatctccgctcatatcgctaatg
caagatcaggtaagtcaactacaagcacttggggtaaaagccgcttacgtaaataacagc
ttagcgcgagaagagcagcaattggtgtatcaacagcttcatcaggggcaaattaagctt
ttatatgtggcacctgaaaaagtattacaacgcgaatttttagagcgtttatcgcattta
aatgtaagcttatttgccattgacgaagcgcattgtgtgtcgcattggggccacgatttt
aggcctcattactttcgcttaaacgaattaaagcaacgttttgcacatgtacccatgatg
gcgctcactgcaactgccgataaagccacccgttttgatatagttgagcaactaaaacta
caacagccttatattcatactggcagctttgatcgccccaatattcgctacaccatagaa
gaaaaatttaaacctatggtgcaactgcttcgctacttaaaagagcaaaaaagccaaagc
ggtattatttattgcaccagccgtaaacgcgtagacgacattgctgaaaaaattgcagat
gcagggctaaacgctgccgcttaccatgcaggtatgagtaacgagcaacgacaatttgta
caaactggttttgcacgtgacgatatacaaatagtggtcgcaaccgttgcctttggtatg
ggtataaacaagcctaacgtgcgttttgtactgcattacgatattccaaaaagtatagag
tcgtactatcaagaaacggggcgtgctgggcgagatggacttgccgcagaagccataatg
tattttgacccagctgatattggccgtgtaagacgcttttttgaagacatagacgacgag
caacgccgccgtgtagaagaacaacgctttaacgcaatggcaagctttgcagaagcacaa
acgtgtcgccgccaaatattgcttaactattttagtgagtatcagcgcgaaccttgtggt
aactgcgatatttgtctaaatccacctaaaagctttgacggtacattggttgcccaacaa
gcgctttcttgtgtgtatagagctgaccagcgctttggtcttgggtacattgttgaatta
ctacgtggtgcaaatactagccgcatacgcgataacaatcatcatgagctaagcacttac
ggcataggtaaagataaaagcagtgaattttggcttagtattttacgccaacttattcac
caaggcttacttagccaagatataacacaaggtgcgtcacttaggttaaccgaagccgcg
cgtgcaattttaaaaggtgagtacgcactgcaattagccgagccacgcctgcaagccaaa
cacgtttatcaagataagttagcacaatttaattacgacaaaaaactgtttgctcgcctg
cgcgcactacgtaaagaacttgctgatgccgatgatgtaccaccttatgtggtatttaat
gataaaacattagccgaaatggcgcagcttatgccaacaaacgacagtgaatttttaaaa
gtgtcgggtgtgggttttactaagttaaataagtacggcggcgaatttttaacggcaatt
cgcaattacctagctacaaattaa
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