Pseudoalteromonas arctica: PARC_b0640
Help
Entry
PARC_b0640 CDS
T05179
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
part
Pseudoalteromonas arctica
Pathway
part03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
part00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PARC_b0640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
part03019
]
PARC_b0640
Enzymes [BR:
part01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PARC_b0640
Messenger RNA biogenesis [BR:
part03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PARC_b0640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Cas3-like_C_2
AAA_19
Flavi_DEAD
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ATC88818
UniProt:
A0A290S9K0
LinkDB
All DBs
Position
II:597087..598346
Genome browser
AA seq
419 aa
AA seq
DB search
MDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQKLVESELSTTNAPH
ALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANALKEGVDIVVATPGRLF
DHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQILLFSATFPAAIKQF
ASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIGKKNWQQVLVFVNMKET
ADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVATEVAARGIDIDGLPRV
INIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFEIETLIGQKIKRVYLEGYE
VSNREVLIDKIGKKPAHLRRTRSNKLSGQATGEARAVNRSRISSVRKSLKGEKLSLKKS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
ttggacgaacttaactatcacactcttacgcccattcagcgcgcagcaattcctgctgtt
cgtaaaggtaaagacgttttagccagtgcacaaactggtaccggcaaaactgccgcgttt
gctttacctatcatccaaaaattggttgagtctgaactcagcacaacgaatgcacctcat
gcattagtacttgctccaacgcgtgaacttgcagaacaaattgcaaataattttagagat
tttgcaaagcatacatcacttaaagtcgttagcttatttggtggtgttagcactgccggc
caagcaaatgctttaaaagaaggtgtagatattgttgttgcaacgccaggtcgtttattt
gatcatattcgtttaggtaacttaagccttgcaagtgttaagcaccttgttcttgatgaa
gctgaccgtatgcttgatatgggctttattgaagatatgcaaaacgtgattaaaagctgt
gcagaagagcgccagattttacttttctctgctacattccctgcagcaattaaacaattt
gcatctaaagtattgaaacaagctgaaatagtgcgtgttgatcaaactaacagtacagca
agcaccgttgagcatgttgtttaccctgttgaagagcgtcgtaagcaagagctactttct
gaattgattggtaagaaaaactggcaacaagtgcttgtcttcgtaaacatgaaagaaaca
gctgatgagcttgttaaagagcttaaccttgatggtatcccggcaggcgtttgccacggt
gataaatctcaaggtaaccgtcgtcgtgctttacgtgaatttaaagaaggcaaggtacgc
gtattagtggctacagaagtcgctgctcgtggtattgatattgatggcttacctcgtgta
attaatattgatttaccttggcttgcagaagattacgttcaccgtattggccgcacaggt
cgtgctggtcgccaaggtcaagcaatctcatttgttagccgcgaagaagaaaacactttg
tttgaaattgaaacgctaatcggccagaaaatcaaacgtgtatatttagaaggttatgaa
gtaagtaaccgtgaagtactaattgataaaattggtaaaaaaccagcgcatttacgccgt
acacgttctaacaagttatcaggacaagcaaccggtgaagcgagagcagtaaatcgctca
cgtatttcaagcgttcgtaaaagcttaaaaggcgaaaaactgtcacttaaaaagtcatag
DBGET
integrated database retrieval system
