Phalacrocorax aristotelis (European shag): 142048513
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Entry
142048513 CDS
T11493
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
142048513 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
parx04040
]
142048513 (SCN8A)
Ion channels [BR:
parx04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
142048513 (SCN8A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
ATP-synt_B
GPHH
IQ
FraC
Motif
Other DBs
NCBI-GeneID:
142048513
NCBI-ProteinID:
XP_074931607
LinkDB
All DBs
Position
26:2256551..2315798
Genome browser
AA seq
1843 aa
AA seq
DB search
MIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIARGFCIDGFTFLRDPWN
WLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALIGLQLFMGNLRNKCVIWPINVNETLLDNGSRGFDWEEYTNNMSNFYII
PGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSWAFLALFRLMTQDFWENL
YQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAEQKEAEFKAM
LEQLKKQQEEAQAAAMVTSAGTVSEDAVEDDGGGRMSRSSSEISKLSSKSAKERQNRRKK
RKDKELSEGDEKCDNEKVFKSESEDGMRRKAFRLPDNRLGRKFSIMNQSLLSIPGSPFLS
RHNSKSSIFSYKGRFRDPGSENEFADDEHSTVEESEGRRDSLFIPIRGRDRRSSYSGYSG
YSQGSRSSRIFPNLRRNVKRNSTVDCNGVVSLIGGPPSSMPGGRLLPEGTTEIEIRKKPG
GSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELEESQRKCPPCWYKFANTFLIWECHP
YWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPEFEHVLSVGNLVFTGIFT
AEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELSLADVEGLSVLRSFRLLRVFKLAKS
WPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINPECELPRW
HMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLALLL
SSFSADNLAATDDDGEMNNLQISVIRIKKGIAWTKAKVREFMQAHFKQREADEVKPLDEL
YDKKVNCIANHTGADINRDIDYQKNGNGTTSGIGSSVEKYIIDEDHMSFINNPNLTVRVP
IAVGESDFENLNTEDFSSDTDPDGSKEKLDDTSSSEGSTIDIKPEVEEVPVEAPEEYLDP
DACFTEGCMQRCKCCQVNIEEGLGKSWWTLRKTCFLIVEHNWFETFIIFMILLSSGALAF
EDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWCAYGFVKFFTNAWCWLDFLIVAVSLV
SLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIF
WLIFSIMGVNLFAGKYHYCFNETAEERFEIEVVNNKTDCEALMPPNSTEIRWKNVKINFD
NVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPKYEDNIYMYIYFVIFIIFGSFFTLN
LFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNRIQGAVFD
FVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEDILYWINLVFVIFFTCECVLKMFALR
HYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGI
RTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDMFNFETFGNSMIC
LFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLIV
VNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQFIEYSKLADFADALEH
PLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGELDILRQQMEERFVASN
PSKVSYEPITTTLRRKQEEVSAVVIQRAYRARLARRGFISRRPVSAKLENGGANREKKEG
TPSTASLPSYDSVTKPEKEKQQRAEEGRRERAKRQKDVRESKC
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atgatcataatgtgcactattttgaccaactgtgtattcatgacttttagtaacccacct
gaatggtcgaagaatgtggagtatacattcactggcatttatacatttgaatcacttgtg
aaaattattgcaagaggtttctgtatagatggctttactttcctccgtgatccatggaac
tggctagatttcagtgtgatcatgatggcatatgtcacagagtttgtggaccttgggaat
gtctcagcattgagaactttcagagttctccgagctttgaaaactatctctgttattcca
ggcttgaagaccattgtgggggccctaattcagtctgtgaagaagctgtcagatgtaatg
atcttgacagtattctgtctcagtgtctttgctctgatcgggttgcagctgtttatgggc
aatttaaggaacaagtgtgtgatatggccgattaacgtgaatgagacgctcctggataac
ggctccaggggctttgactgggaggagtacaccaacaatatgtcaaatttttacataatt
cctggcgcccctgatccgttgctctgtggtaacagctcagatgcaggtcaatgtccagag
ggttacacgtgcatgaaggcaggacggaaccccaactacggctacacaagctttgacact
ttcagctgggcttttctggctttatttcgccttatgactcaggacttttgggaaaacttg
tatcaattaaccttacgagcagcaggaaaaacctacatgatcttctttgtcttggtgatc
tttgtgggatcgttctatctggttaatctgattttggctgtggtagctatggcttacgaa
gagcagaaccaggccacgctggaggaggcagagcagaaggaggcggaatttaaggccatg
ttagaacaattgaaaaagcagcaggaggaagcacaggctgctgctatggtcacttcggca
gggacagtctctgaagatgctgtggaagatgatggtggggggaggatgtctcggagctct
tcggagatttccaaactcagttccaagagcgccaaggagcgtcaaaacaggaggaaaaaa
cgaaaggacaaggaactgtcagaaggagatgagaagtgtgacaatgaaaaggtgttcaag
tctgaatctgaggatggcatgaggaggaaagcattcaggctaccagataacaggctagga
aggaaattttccatcatgaaccagtctctcctcagtatcccaggctccccttttctctcc
cgacacaatagcaagagcagcatcttcagctacaaggggcgatttcgtgacccaggttca
gagaacgagtttgccgatgacgagcacagcacagtggaggaaagcgaaggcaggagagac
tccctctttatccccatccgcggtcgcgatcgaaggagcagctacagcggctacagcggc
tacagccaaggcagccgctcctcgcggattttccccaacctccgccgaaacgtgaagagg
aacagcacggtggattgtaacggcgtggtgtccctcatcggtggcccaccttccagcatg
cctgggggacgccttctgcctgagggtactactgaaatcgaaattagaaagaaacccggt
gggtctctcttggtctcgatggatcaggtgaatgcgtcctatggaagaaaggatcgaacc
aacagtgtaatgacggggttgaccaatacccttgttgaggagctggaagagtcccagagg
aagtgtcccccttgctggtacaaatttgccaacacgttcttgatctgggagtgccacccc
tactggatcaagctgaaggagatagtgaacttaattgtcatggatcctttcgttgacttg
gccatcaccatctgtattgtgctgaacactttgttcatggcaatggagcaccatcctatg
accccggagtttgaacatgtgctctccgtaggaaatctggttttcactggaattttcaca
gcagaaatgttcctgaagctcattgccatggatccctactattatttccaagaaggctgg
aacatctttgatggatttattgtctccctcagtttaatggaactgagtctagcagatgtg
gaaggactttctgtgctgcgatctttccgattgttgagagtcttcaaactggccaagtcc
tggcccactctgaacatgctgataaaaatcatcggtaactcagtgggtgctttggggaac
ttgaccttggtgctagccatcatcgtgttcatctttgctgtggtgggcatgcagctcttc
ggcaaaagctacaaggagtgtgtctgcaagatcaatccggagtgtgagctaccccgctgg
cacatgcacgatttcttccactccttccttattgtcttccgtgtgttgtgtggggaatgg
attgagaccatgtgggattgtatggaagtggcaggacaggccatgtgcttgattgtcttc
atgatggtcatggtcatcggaaatttagtggtgctgaacctcttcttggccttgctactg
agctccttcagcgcagacaacttagcagcaacagatgatgacggggagatgaacaacctg
cagatatctgttattcgcatcaagaagggcattgcctggaccaaggccaaagtgcgtgag
ttcatgcaggctcatttcaagcagagagaggcagatgaggtcaagcccttggatgaattg
tatgacaagaaggtgaactgcatcgctaaccatacaggggccgatatcaacagagacatt
gattatcagaagaacggcaatggcacgacgagtggaattgggagcagtgtggagaagtac
ataatagatgaagatcacatgtccttcatcaataaccccaatctcactgtccgggtacct
attgctgtaggtgaatccgattttgaaaatctcaacacagaagatttcagcagtgataca
gaccctgatggcagcaaagagaaacttgatgataccagctcctctgaaggtagcaccatt
gatatcaagcccgaagtggaagaggtccctgtggaggcaccagaggagtatctggaccca
gacgcatgcttcacagaaggttgtatgcagcgctgtaagtgttgccaggtgaatattgag
gaagggctggggaagtcctggtggaccttgcggaagacttgttttctgattgtggaacat
aactggtttgagactttcatcatcttcatgatcctactgagcagtggtgctctggctttt
gaggatatttacatagaacagagaaaaaccatccggaccatcttggagtacgcggacaag
gtcttcacctacattttcatcctggagatgttgctgaaatggtgtgcttacggatttgtc
aagttcttcactaacgcctggtgctggctggatttcctcattgtggctgtctctttagtc
agccttatagctaatgccctgggctactcggaactaggtgccataaagtcccttaggaca
ctaagagctttgaggcctttaagagcgttgtcccgatttgaggggatgagggtggttgtc
aacgccttggttggcgctatcccttccattatgaatgtgttgttggtctgccttatcttc
tggctgattttcagcattatgggggttaacctgtttgccgggaaatatcattactgcttt
aatgaaacagctgaggagcgctttgaaatagaggttgttaacaacaagacagactgcgaa
gcactgatgccacccaactccacagagatccgatggaagaatgtgaaaattaactttgac
aacgttggggcaggttatctggctcttctgcaagtggcgaccttcaagggctggatggac
atcatgtatgcagcagtagattccagaaagcaagaagagcaacccaagtatgaggacaac
atttacatgtacatatattttgttatcttcattatctttggctcctttttcaccctgaac
ttgttcattggtgtcatcattgacaacttcaatcaacagaagaaaaagtttggaggtcaa
gatattttcatgacagaagaacaaaagaagtactacaacgccatgaaaaaactgggctca
aagaagcctcaaaaacctattccccggcctctgaaccgcattcaaggcgctgtctttgac
tttgttactcagcaagcgtttgacatagtcatcatgatgctcatttgcctcaacatggtg
accatgatggtggagacagacacgcaaagcaagcagatggaggacatcctgtactggatc
aacctggtgtttgtcatcttcttcacctgtgagtgtgtgctgaagatgttcgccttgcgg
cactattatttcaccatcgggtggaacatttttgacttcgtggttgtgattctgtccatc
gtgggaatgttcctggctgaaatcattgagaagtattttgtgtcgcccactctcttccga
gtcatccgactggctcgcattggacgtatcctgcgtttgatcaaaggagccaaaggaatc
cgcaccttgctttttgccttaatgatgtccttgcctgccttgttcaacattggcctcttg
ctgttcttggtcatgttcatcttctccatctttggcatgtcaaactttgcctacgtcaag
catgaggccggcatagatgatatgttcaactttgagacctttggcaacagcatgatctgc
ttgttccagatcaccacgtcagccgggtgggatggcctgctgctgccgatcctaaaccgg
cccccagactgcgacctagacaaggagcaccctgggagtggttttaagggggattgtggg
aacccttcagtggggatatttttctttgtgagttacatcatcatctccttcctgatcgtg
gtcaacatgtacattgccatcatcctggagaacttcagcgtggcgacagaggagagcgcg
gatccgctgagcgaggacgactttgagaccttctacgagatctgggagaaattcgacccc
gacgccacacagttcatagagtacagcaagctcgcagactttgctgatgctttggaacat
cctctccgcgtcccaaaacccaacaccattgaactcattgccatggacctgcctatggta
agtggagacaggatccactgtttagacatcctctttgctttcaccaaacgtgtcctgggg
gacagtggagagctggatatactgagacaacagatggaggaaagatttgtggcatccaac
ccttccaaagtgtcttatgagcctatcacaaccacgctgcggcgtaagcaggaagaagtt
tcagcagtggttatccagagggcttacagggctcgtttagcaaggcggggctttattagc
cgaaggccggtctccgcaaaactggagaacggaggagcaaacagggagaaaaaagaaggc
accccatctactgcgtctctcccgtcgtacgacagtgttaccaaacctgagaaggagaaa
cagcagcgggcggaggagggaaggcgagaaagagcgaaaaggcaaaaagacgtcagggaa
tccaagtgttga
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integrated database retrieval system
