Phalacrocorax aristotelis (European shag): 142048662
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Entry
142048662 CDS
T11493
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
parx Phalacrocorax aristotelis (European shag)
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
parx03016
]
142048662 (RTCB)
Enzymes [BR:
parx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
142048662 (RTCB)
Transfer RNA biogenesis [BR:
parx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
142048662 (RTCB)
Prokaryotic type
tRNA splicing ligases
142048662 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
142048662
NCBI-ProteinID:
XP_074931881
LinkDB
All DBs
Position
1:complement(159075406..159087480)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccaaacatgcacgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgtttgaggagctgcgcaacgcctgccgcgggggaggtgcaggt
ggctttttgcctgctatgaaacagattgggaatgtggcggcattacctggtattgttcac
agatcaataggccttccagatgtccattctggctatgggtttgccattggtaacatggct
gcctttgatatgaatgatcctgaagcagtggtttcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgcttactgcgtacaaatttggatgaaagcgatgtgcagcccgtgaag
gagcagcttgcccaggctatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactagagatgggtgtggactggtctctc
cgggagggctacgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctg
caggctgaccccaacaaggtttcctcaagagcaaagaagaggggcctgcctcagctgggg
accctaggagccggaaatcattacgccgagatccaggttgtggatgacatttacaacgaa
tatgctgccaggaagatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggcagcagaggccttggccaccaagttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcgccagctggcgtgtgccaggattgcctct
gcagagggacaggattacttgaagggaatggcagctgctggaaactatgcatgggtcaac
cgctcttctatgacttttctaacaagacaggcctttgccaaggtcttcaacacaacccca
gatgaccttgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcaa
catgtagtggatgggaaggagcggacactgctggtgcacagaaaggggtcaaccagggcc
ttccctcctcaccatcctcttatcgctgttgattatcaactgactggacagcctgttttg
atcggcgggactatgggcacctgtagctatgttcttacgggcacagagcaaggcatgact
gagaccttcggaactacttgccatggagccggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttataagaatgtgacagat
gtggttaacacctgccatgcagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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