Phalacrocorax aristotelis (European shag): 142048686
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Entry
142048686 CDS
T11493
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04510
Focal adhesion
parx04512
ECM-receptor interaction
parx04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142048686 (COL2A1)
04518 Integrin signaling
142048686 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142048686 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
parx00536
]
142048686 (COL2A1)
Glycosaminoglycan binding proteins [BR:
parx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142048686 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
142048686
NCBI-ProteinID:
XP_074931908
LinkDB
All DBs
Position
26:1350641..1371617
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AA seq
1485 aa
AA seq
DB search
MPGRRPLRLAAALASLLLAAVAAQDRDLPEAGSCLQDGQSYSDKDVWKPEPCRICVCDTG
TVLCDEIICEELRDCPSPEIPFGECCPICPTDQPSGQPGPKGQKGEPGDIKDVVGPRGPP
GPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQ
MAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGPR
GPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA
GAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPA
GAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSA
GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAP
GPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPK
GATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVM
GFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS
GFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP
GTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD
GARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGAD
GQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAA
GRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGED
GPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPV
GPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPT
GKQGDRGETGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLP
GPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPP
GNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGSLRQHDVEVDATLKSL
NNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGET
CVYPNPSSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEDLAPNTANIQMTFLRLLS
TEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHT
GKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgccgccgccctcgccagcctcctcctcgccgcc
gtcgccgcgcaggaccgagacctccccgaagcaggcagctgcctgcaggacgggcagagc
tatagcgataaggacgtgtggaagccggagccgtgccgtatctgcgtgtgcgacacgggg
accgtcctctgcgacgagatcatctgcgaggagctgcgggattgtcccagccccgaaatc
cccttcggagagtgctgccccatatgtcccactgaccaacccagcgggcaacctggcccc
aagggacagaagggcgaacctggtgacattaaagatgtcgtaggaccccgagggcctccg
ggaccacagggcccggcaggcgagcagggacaacgaggggaccgtggtgagaagggggag
aagggtgctcctggcccccggggcagggatggagaacccggcacccctggaaatcccggc
ccccctggcccccctggacctcccggcccccctggcctcggtgggaacttcgcggctcag
atggcggggggcttcgacgagaaggctggaggtgcgcagatgggcgtcatgcagggcccc
atgggccccatgggaccccgtggcccccccggaccttccggtgctcccggtccccaagga
tttcaaggcaaccccggcgagcccggcgagcccggcgctgctggtccgatgggtccccgg
ggaccaccgggaccacccgggaaacccggcgacgatggcgagactggcaaacctggtaaa
tctggcgagcgcggcccccccggcccccagggtgctcgtggcttccccgggacccccggt
ctccctggagtgaaaggccaccggggctatcccggcttggacggcgccaagggagaggca
ggggctcctggagccaagggtgaatccggctcacctggcgagaacggctcccccggcccc
atgggtccccgtgggctgcctggagagagaggacgtcccggcccctccggtgctgcgggt
gcacgtggcaacgatggtctccccggcccagctggaccccctggacctgtcggcccagcc
ggagcccccggcttccctggtgcccccggctcgaagggtgaagctggtcccactggcgca
cgaggtcccgagggtgcccagggtccccgcggcgaatccggcacccccggctctcctggc
cctgccggcgcccctggtaacccagggactgacggcatccccggtgcgaagggctcagcg
ggcgccccaggcatcgccggcgctccaggcttccccggcccccgcggaccacccggaccc
cagggtgccaccggcccactgggacccaagggacagacgggagaacccggcatcgcaggc
ttcaaaggcgaacagggaccgaagggcgagacgggacccgcaggaccccaaggtgccccc
gggccggctggcgaggaaggcaagagaggagcccgtggtgaacccggagctgccggccct
gtgggaccacctggagagaggggtgctcccggcaatcgtggcttccctggacaggatggg
ctggctggaccaaagggtgctccaggcgagcgtggccccgctggcctcgcgggtcccaag
ggagccaccggcgaccctgggcgccctggagagcccgggctgcccggagccaggggtctc
accggccgcccaggtgatgctggtcctcaaggcaaagtcggcccaaccggtgctcccggc
gaggacggacgccccggcccccccggcccgcagggagctcgtggccagcccggcgtgatg
ggtttccccggtcccaaaggtgctaatggcgagcctggaaaggctggtgagaaaggactc
cctggtgctccagggctgcggggtctccctggcaaggacggtgagacaggagctgccggc
cccccgggacctgccggtcctgcgggcgagaggggagaacaaggagctcccggtccctcc
ggcttccagggcctgcccgggccaccaggtccccccggcgagagcggcaaacccggagat
cagggtgttcctggagaagccggtgcccccggtcttgttggtcccagaggtgaacgcggc
ttccccggtgaacgtggctctcccggcgcacaagggctgcaaggtccccgcggtctcccc
ggcacaccgggcaccgacggacccaagggtgcaaccggaccggctggccccaacggcgcc
cagggtcccccagggctgcaaggaatgcccggtgagagaggagcagctggcattgccggt
cccaagggagaccggggagacgtcggagagaagggccccgagggagcacctggaaaggac
ggtgcacgcggtctgacgggtcccatcggtccccccggccctgctggccccaacggcgag
aagggtgaatccggcccccctggtccatccggcgctgccggtgcccgcggtgcccccggc
gagcgcggtgagcccggtgcccccggtcctgctggatttgctggccccccgggcgccgac
gggcaacctggtgccaaaggcgaacaaggagagcccggacagaagggtgacgccggcgct
cccggtccccaaggtccctctggcgcacctggcccgcagggtccaactggtgtaactggt
cccaaaggagctcggggtgctcagggtccccctggagccaccggattccccggcgccgct
ggccgcgtgggaccacccggccctaacggtaacccaggcccccccggtccccccggctct
gctggcaaagatggtcccaagggtgctcgtggtgatgccggtcccccgggccgtgccggt
gaccccggtctccaaggccctgctggcccccctggcgagaaaggtgaacccggcgaggac
ggccccgcgggtcctgacggtcccccaggtccccaaggtttggcaggacagcgcggcatc
gtcggtcttcccggacagcgtggtgagagaggcttccctgggctgccggggccatcgggc
gaacctgggaaacaaggagcacccggctctgctggcgaccgcggcccccccggccccgtg
ggtccccctggtctgacgggtcccgctggtgaacctgggcgtgagggtaaccccggctct
gatggaccccccggccgagacggcgcagccggcgtgaagggcgatcgtggcgagaccggt
cccgtaggtgcccctggtgctcccggtgcccccggcgctcccggccccgtcggtcccacc
ggcaaacaaggagacagaggcgagacgggtgcacaaggtcccatgggtcctgctggtcct
gctggtgctcgaggcatgccgggtccccaaggccctcgtggtgacaagggtgagacagga
gaggctggagagaggggcctgaagggccaccgtggcttcactggtctgcagggtcttccc
ggaccacccggtccttctggagaccaaggtgctgctggtcccgcgggtccctccggtccc
aggggtccccccggccctgtcggcccctctggcaaagatggctccaacggcatgcctggc
cccatcggtcctcccggcccccgcggaagaagtggtgaaccaggtcctgcgggtcctccc
ggaaacccaggtccccccggtcctcctggccccccaggcactggcatcgacatgtcagct
ttcgctggcctgggtcagacggagaagggtcccgaccccatccgctacatgcgggcggac
gaggccgccggcagcctgcggcagcacgacgtcgaggtggacgccacgctcaagtccctc
aacaaccagattgagagcatccgcagccccgagggctccaagaagaacccagccaggacc
tgccgcgacatcaagctttgccatcctgagtggaagagcggagattactggatcgacccg
aaccagggctgcactttggacgccatcaaagttttctgcaacatggagacgggcgagacc
tgcgtctaccccaaccccagcagcatccccaagaagaactggtggaccagcaagaccaaa
gacaagaagcacgtctggttcgcagagaccatcaacggcggtttccactttagctatggt
gatgaagatctggctcccaacaccgccaacatccagatgaccttcctccgcctcctgtcc
accgaaggctcccagaacgtcacttaccactgcaagaacagcatcgcctacatggacgag
gagacgggcaacctgaagaaagccatcctcatccagggatccaacgacgtggagatcaga
gccgagggcaacagcaggttcacgtacagcgtcttggaggacggttgcacgaaacacact
ggtaaatggggcaagacagtcattgagtaccgatcgcagaagacctcgcgcctgcccatt
gtagatattgcacctatggacattggtggagccgatcaggagtttggcgtggatattggc
ccagtctgcttcttgtaa
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