Phalacrocorax aristotelis (European shag): 142049352
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Entry
142049352 CDS
T11493
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
parx Phalacrocorax aristotelis (European shag)
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
parx03021
]
142049352
03036 Chromosome and associated proteins [BR:
parx03036
]
142049352
Transcription machinery [BR:
parx03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
142049352
Chromosome and associated proteins [BR:
parx03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
142049352
SLIK complex
142049352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
142049352
NCBI-ProteinID:
XP_074933102
LinkDB
All DBs
Position
W:10210560..10290566
Genome browser
AA seq
1806 aa
AA seq
DB search
MNRHSDEDIVRNSSGESSQSDNDSGSASASGSGSSSGSSSDGSSSQSGSSDSESGSESGS
QSESESDTSREKKQVQAKPPPKADGSEFWKPSPSTLGVQRSAVLKKQQQQKAASSDSGSE
EDSSSSEDSADDSSSETKKKKHRDEDWQMSGSGSVSGTGSDSESEEDREKSSCEDSESDY
EPKNKVKSRNPPSRIEPKTGKKIVGQKKRQLDSSHDDEYDKRGSRRQATVNVSYKEAEET
KTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRIGRKGATGAATTIYAVEADGDPNTGFE
KSKEVGEVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASP
EDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGAL
IAKKFQGCIDEYFSRNQSKTTPFKDCKILKQRPRFVALKKQPSYIGGHESLELRDYQLNG
LNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQRE
IQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNW
VFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSW
EDFEEEHGKGREFGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKW
ILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSG
KLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALD
HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN
IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAI
LKFGAEELFKEPEGEEEEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMD
EDDIELEPEKNLRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQINFNGSEGK
RSRSGRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERL
DAIARDAELVDKSETDLKRLGELVHNGCIKALKDNFFGQERAGGRLGKVKGPTFRISGVQ
VNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLIGIYEY
GYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLTGA
GNSKRRKTRTKKNRATKASKIKEEIKSDSSSPPSERSDEDDEDNQVKIIHKDEIVSVKHP
HKKIKAEKENEEKPEPNIDLKKEAEGKRETKEKENKRDLKREKKEKEDKKELKNIKEKRE
NKVKESTQKEKEVKEEKVNEIKSENKEKNKKVSLLDIPVHITATSEPVPISEESEELDQK
TFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIK
QWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQEPQQHSDQNISSNMNTHVIRNPDVERL
KENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKSESRKRFYSAFSNGKDHRDWDH
YKQDSRYYSDSKHRKLDDHRSRDHRSNLEGSLKDSRPHSDHRSHSDHRIHSDHRSTSEYS
HHKSSRDYRYHSDWQMDHRASGSGPRSPLDQRSPYDSRSPLGHRSPFEHSSDHKSTPEHT
WSSRKT
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgaatagacacagtgatgaagacattgtaagaaacagtagtggagagtcaagccaatca
gataatgattctgggtcagcatcagcttctggatctggttcaagctctggaagcagtagt
gatggaagtagcagtcaatcaggtagcagtgactctgagtctggttcagagtcaggcagt
caatcagaatcagagtctgatacatctagagagaagaaacaagttcaagctaaaccacca
ccaaaagctgatggatctgagttttggaagcccagtccaagtacacttggtgtgcagaga
tcagcagtgctcaagaagcaacaacagcagaaggcagcatcatcagacagtggttcagaa
gaggattcatcgagcagtgaagattctgcagatgactcttccagtgaaaccaagaagaaa
aaacatagagatgaagactggcaaatgtctgggtcagggtcagtatcaggaactggttct
gattctgaatcagaggaagatagagaaaaaagcagttgtgaagatagtgaatctgactat
gagccaaaaaacaaggtcaaaagccggaaccccccaagcagaattgagccaaaaactgga
aaaaagattgtaggacagaaaaagaggcaacttgattcatcacatgatgatgagtatgat
aagagagggtctcgtcgccaggcaacagtcaatgttagttacaaagaagctgaagaaacc
aagacagattctgatgacttgttggaagtttgtggagaagatgtcccgcagcctgaagaa
gatgaatttgaaactatagagaagtttatggatagtcgaattggccgaaaaggagccact
ggtgctgcaaccaccatctatgcagttgaggcagatggtgacccaaatactgggtttgaa
aagtcaaaggaggtaggagaagtacagtatcttattaaatggaaaggctggtcacacatc
cataatacttgggaaactgaggaaacactgaagcaacaaaatgttaaaggaatgaagaaa
ctggacaactataagaagaaggatcaggaaacaaaacgctggttgaaaaatgcttctccg
gaagacgtggaatattataactgccagcaggaacttacagatgatctacataaacagtat
caaatagtggaaaggataattgctcattcaaatcagaaatcagcagctggttatccagat
tactattgcaaatggcagggtctgccttactcagaatgcagctgggaagatggtgctctc
attgccaaaaaatttcaggggtgtattgatgagtattttagcagaaatcagtccaagacc
actccatttaaggactgcaagattctaaaacagaggccgaggtttgttgcactaaagaag
caaccatcttatattggaggacatgagagtttagagttaagagattatcagttaaatgga
ctgaactggcttgctcactcatggtgcaaagggaatagttgtattcttgcagatgaaatg
ggtctgggtaaaacaatacaaacaatatcttttctgaactacctgtttcatgaacatcaa
ctgtatgggcctttcttgctagtcgtgccactttctaccttgacatcttggcaaagagag
attcaaacttgggctcctcagatgaatgctgtggtttacttaggagatataactagcaga
aatatgataagaactcatgaatggatgcatccacagaccaagcgattaaaatttaatata
cttctaacaacctatgaaattttgctgaaggataagtcattccttggtggtctgaattgg
gtatttataggagttgacgaagctcatcgtttgaaaaatgatgattcccttctgtataag
actttaatagactttaagtctaatcatcgtcttcttattactggaacccctctgcaaaac
tccctcaaagagctttggtctttgctgcacttcatcatgccagaaaagttttcttcctgg
gaagattttgaagaggagcatggcaaagggagagagtttggttatgcaagtcttcacaaa
gaacttgaaccatttctactcagaagagttaaaaaagatgtagaaaagtctttacctgcc
aaggttgaacaaattttgaggatggaaatgagtgcattgcagaagcaatattacaaatgg
attttaaccagaaattataaagccctgagtaaaggttcaaaaggcagtacctcaggcttt
ttgaacatcatgatggaactcaagaagtgctgtaaccattgctacctcattaaaccacca
gatgataatgaattctataataaacaggaggccttacagcatttaatacgtagcagtggg
aaactaatccttcttgacaagctactgattcgtctacgagaacgtggcaacagagtactg
attttctctcagatggtgaggatgctagacatcctagcagagtatttgaaatatcgtcag
tttccctttcagagacttgatggatcaataaaaggggaattgaggaaacaagccctggat
cattttaatgcagaaggatcagaggacttctgctttttactgtctaccagagctggagga
ttaggtataaacttggcatctgctgacactgtagttatatttgattctgactggaatcca
cagaatgatctgcaagcacaggctagagctcataggattggacagaagaaacaggttaat
atttatcggctagtcacaaaaggatcagtagaagaagatattcttgaaagagccaagaaa
aagatggtgttagatcacttagtaattcagagaatggacactacagggaaaactgtacta
catacgggctctactccttccagctcaacaccttttaataaggaagagttatcagcaatt
ttgaagttcggtgctgaagaactttttaaagaacctgaaggggaagaagaggagcctcag
gaaatggatatagatgaaatcctgaagagggctgaaactcgagaaaatgagccaggccca
ctgactgtaggagatgagttgctttcacagttcaaggtggctaacttttccaatatggat
gaagatgacattgagctggaaccagaaaaaaatttaagaaattgggaagaaatcattcca
gaagtccagcggcgacgaatagaagaggaagaaagacaaaaagagcttgaagaaatatat
atgctcccaaggatgagaaactgtgcaaaacagatcaactttaatggaagtgaagggaaa
cgcagtaggagcggaagatattctggatctgatagtgactccatctcagaaagaaaacga
ccaaaaaaacgtggacgaccacgaactattcctcgagaaaatattaaaggttttagcgat
gcagagattaggcggtttatcaagagttacaagaaatttggtggcccacttgaaaggtta
gatgctatagctagagatgctgagctagttgataaatctgagacggaccttaaacgtctg
ggagaacttgtacataatggatgtattaaggctttaaaggacaatttctttggacaagaa
agagcaggaggtagacttgggaaagttaaaggcccaacattccgaatatcaggagtgcag
gtgaatgcaaagctagtcatctctcatgaagaagagttggcaccattgcacaaatccatt
ccttcagatccagaagaaaggaaaagatacgtcatcccatgccacaccaaggcagctcat
tttgatatagattggggtaaggaagatgattccaatctgttaataggtatctatgaatat
ggttatggcagctgggaaatgataaaaatggatcctgatctcagtttgacacaaaagatt
ttacctgatgatccggataagaaaccccaggccaagcagttacagacccgtgcagattac
ctcattaaattactgaataaagaccttgcaagaaaagaagcacaaaggcttactggtgca
ggcaattcaaagaggagaaaaacaagaactaagaagaatagagcaacaaaggcttcaaaa
attaaagaagaaataaaaagtgattcctcatcaccaccctcagaaagatctgatgaagat
gatgaagataatcaggtaaagatcattcataaggatgagattgtttcagtgaaacatcca
cataaaaaaataaaagcagaaaaagaaaatgaagaaaagcctgagccaaatattgatcta
aagaaggaagctgaaggaaaaagagagacaaaagaaaaagaaaataagagggatttgaaa
agggagaaaaaagaaaaagaggataagaaagaattaaaaaatattaaagaaaagagagaa
aacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagaaaaggtaaatgaa
atcaaatctgaaaataaagaaaaaaataaaaaagtttcattgttggatattccagttcat
attactgcaactagtgaaccagttcctatatctgaagaatctgaagaactggatcagaag
acattcagtgtgtgcaaagaaagaatgaggcctgtcaaagcagcattgaaacaactggat
agaccagagaaaggcctttctgaaagggaacagttggagcatactagacagtgtctaatc
aagattggggaccacattactgaatgtctaaaggagtacacaaatcctgaacaaattaaa
cagtggagaaaaaacttgtggatttttgtctctaagtttacagaatttgatgccagaaag
ctgcacaagctgtataaacatgcaatcaaaaaacgccaagaacctcagcaacatagtgac
cagaatattagcagcaacatgaatacacatgtaattagaaatccagatgttgaaagactg
aaagagaatacaaaccatgatgacagtagcagggacagttattcttctgatagacatttg
tcacaataccatgatcatcataaggacaggcatcagggggatgcttataagaaaagtgaa
tctaggaaaaggttctattcagccttcagcaatggaaaagaccacagagactgggatcac
tataaacaagacagcagatactatagtgatagtaaacatagaaagttggatgaccacagg
agcagagatcacaggtcaaacctggaaggaagtttaaaagacagtcggcctcattcagat
caccgttcccattcagaccacaggatacattcagatcaccgttccacttcagagtacagc
catcataaatcttccagagattataggtaccactcagactggcaaatggaccacagagct
tctggtagtggcccgaggtcaccattagatcagaggtctccttatgattcaagatctcct
ttaggacacagatctccatttgaacactcatcagatcacaaaagtacacctgaacataca
tggagtagccggaaaacataa
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