Phalacrocorax aristotelis (European shag): 142050040
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Entry
142050040 CDS
T11493
Symbol
SMC5
Name
(RefSeq) structural maintenance of chromosomes protein 5 isoform X1
KO
K22803
structural maintenance of chromosomes protein 5
Organism
parx Phalacrocorax aristotelis (European shag)
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parx03400
]
142050040 (SMC5)
DNA repair and recombination proteins [BR:
parx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
142050040 (SMC5)
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Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
FtsK_SpoIIIE
ZapB_rel
AAA_29
BLOC1_2
AAA_25
Motif
Other DBs
NCBI-GeneID:
142050040
NCBI-ProteinID:
XP_074934455
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Position
Z:41821980..41875773
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AA seq
1071 aa
AA seq
DB search
MAVATSGKRTPSQLAAAGSSKQALKTLKARSRFVEGSIVRIFMENFLTYDVCEVRPGPNL
NMIVGANGTGKSSIVCAICLGLAGKPSFIGRADKVGLFVKQGCLKGVVEIELSKIPDNII
ITREIHVVNNTSSWFIDRKPTTLKTVEEQIAALNIQVDNLCQFLPQDKVGEFAKLSKVEL
LEATEKSIGPPEMYQFHCELKNFREKEKELENLCREKAKSLEKMRQRVERYKQDVDRFHE
CKQHLDLIAMLERKRPWVEYESVRQQHEEAKQKRDQAKEELKNLKQMQSPVTKKIQENEE
YLQSLDMKIRDKATDIKDISQKCKQKQDALEMKDKQIEEIQQALRMKKDEEMDRQRKIHN
TQRMIEDWKNELDAMGVCENLQPQTDAVNNELKKLQEERANIDSDISDLRAEKMNQEREK
RRITERLGQLNNIMNMKEENLKGRFRDTHTALIWLRKNKDKFKKKVCEPMMLEINMKDNR
HAKYVENHISTNDMKAFVFESPEDMESFLVEMRDHQKLRVNAVCAPAESCAESLPSRPIE
ELHQYGFFSYLRELFDAPCPVMSYLCSQYRIHDVPVGTEKTRNMIETVLQETKLRQIYTA
EEKYINKVSAYTNRTFSTNTSLRAAQFLTSSVDTDERRQLENQEQDINNMLKSLDMRLTT
LFERQKHLEHRDNELRQQKKELFERGNRRRQLESKIGVKYDSLRQLEQDAVDLEKEYQQA
NVKIKELNVQKARLVTELMHVVKKYISLNILKADLVLQSATVAAEKNRLESEYKAAGEQL
RAAEQQVHDLEDRKQVLAENCKELLKRAQQVCKLSPNQHLPKEFQTAFQALPTTLEEIDA
FLNEEKTRASCFTGLTASVVEEYDKQTQEIQQLTKYLEEKKKELDNYKQKISQVKEKWLN
PLKKLIEKINERFSNFFSSMQCVGEVDLHVENEEEYDKYGIRIRVKFHSSTALHELTPYH
QSGGEKSVSTMLYLMSLQELNRCPFRVVDEINQGMDPVNERRVFDMVVKTACKESTSQYF
LITPKLLQNLNYSDKMTVLFVYNGPFMLDANRWNLKSFCRRRRRLGRMDEQ
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcgacgtcgggaaaaaggactcctagccagctggctgccgccggcagcagc
aagcaggccctgaagacacttaaggcgcgctcccgcttcgtcgagggttccatcgtcagg
atctttatggagaactttctaacatatgatgtctgtgaagtacgtccaggacccaatctg
aacatgattgtaggtgcaaatggaacaggaaagtcaagcattgtttgtgccatctgcctg
ggactggctggaaaaccttcgttcatagggcgagctgataaggttggtctctttgtaaag
caggggtgcttgaaaggtgtagtagaaattgaactgtctaagatacctgacaatatcatt
atcacacgtgagattcatgtggtgaacaatacatcatcatggtttatcgacagaaagcca
acaaccctgaaaacagtggaagagcagattgcagccttaaatatccaagtggacaatttg
tgccagtttcttcctcaggacaaagttggagaatttgcaaaactgagtaaggttgagttg
cttgaagccactgaaaaatccattggtcctccagaaatgtaccaatttcactgtgaactg
aaaaacttcagagaaaaggaaaaagaactggagaacttgtgcagagagaaagctaagtct
ttggagaaaatgagacagagggttgaacgatacaaacaagatgttgacagattccatgaa
tgcaagcaacatctagacttaattgccatgcttgagaggaaaaggccttgggtggaatat
gaaagtgttcgtcagcagcatgaggaagcgaaacaaaagcgagaccaagccaaggaagaa
ctgaagaatctgaagcaaatgcaatccccagtgacaaaaaaaatccaagaaaatgaagaa
tatttgcagagtctggatatgaaaatcagagataaggctactgacatcaaagacatctct
caaaaatgtaaacagaagcaagatgctttggagatgaaagataaacaaattgaagaaatt
cagcaagccttgagaatgaaaaaagatgaagaaatggacagacagaggaaaatacacaac
actcagaggatgatagaggactggaagaatgagctcgatgcaatgggtgtctgtgagaat
cttcagccacaaactgatgctgttaataatgagctgaaaaagttacaggaagagagggca
aatatcgatagtgatatcagtgatctaagagcagagaaaatgaaccaagagagggaaaag
agaagaataactgagcgccttggacaacttaataatataatgaatatgaaggaagagaat
cttaaagggagattcagagacacacacactgctcttatatggctaagaaagaacaaagac
aagtttaaaaaaaaagtgtgtgaaccgatgatgcttgaaatcaatatgaaagataatagg
catgctaaatatgttgaaaatcacatttcaaccaatgatatgaaggcgtttgtttttgag
agtccagaagatatggaatcgtttcttgtggagatgcgcgatcatcagaaactaagagtg
aatgctgtatgcgcacctgctgaatcctgtgctgaaagcttaccttcaagacctattgaa
gaattacaccaatatggatttttctcatatttacgagaattatttgatgctccgtgtcct
gtcatgagttatctttgctcccagtaccgtattcatgatgtccctgtgggaacagagaag
accagaaacatgattgaaacggtcttacaagaaaccaaacttaggcaaatatatacagca
gaagaaaaatacattaataaagtgtctgcttatacaaaccgaaccttctctactaacaca
tccctgagggcagcacagtttcttactagttcagtggacacagatgaaagaaggcagttg
gaaaaccaggaacaggacatcaataacatgttgaagtcattggatatgcgtttgactaca
ttgtttgagagacagaaacatctagaacacagagacaatgagctcaggcaacagaagaag
gagcttttcgagagaggaaacaggaggagacaattggaatcaaaaattggtgtcaagtat
gacagtttaagacaactggaacaagatgctgtcgacctagagaaggagtatcaacaggca
aatgtaaagatcaaagaattaaatgtccaaaaagcaagacttgttactgaattaatgcat
gtcgtaaagaaatacatatcactgaacattctcaaagcagatttggtccttcagagtgct
acagtggctgctgagaagaacagactagaatcagagtataaagcagcaggtgaacagcta
agagctgcagagcaacaagttcatgacctggaagataggaagcaagttcttgcagagaac
tgcaaggaattgctgaaaagagctcaacaggtctgcaaactgagtccgaatcaacatctt
ccaaaagaatttcaaactgcttttcaggctcttccgaccacactggaggaaattgatgct
tttctgaatgaagagaaaaccagagcctcctgtttcacaggcctgactgcttcggttgtt
gaagaatacgataagcagacacaagaaatacagcagttgacgaaatatctagaggaaaag
aagaaagaattggataactataagcaaaagatttcacaggtcaaagaaaagtggctaaac
cccttgaaaaagctgattgagaaaattaatgagaggttcagtaacttctttagttctatg
cagtgtgttggtgaagtggatcttcatgtggaaaatgaggaggagtatgacaagtatggg
attcgcattagagtcaaattccacagtagcacggcacttcatgaattgactccatatcat
cagagtggaggtgagaaaagtgtttccactatgttgtacctgatgtctctacaggaactc
aacagatgtcctttcagagttgtagatgaaataaatcagggaatggatccagtgaatgag
agaagagtttttgacatggttgtgaaaactgcttgtaaagaaagcacatctcagtacttc
cttattacaccaaagctcctgcagaatctcaattacagtgacaagatgacggtgttgttt
gtctacaatggaccttttatgttggatgcaaacagatggaacttaaagtctttctgtagg
cgacgacgacgacttggaaggatggatgaacagtga
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