Phalacrocorax aristotelis (European shag): 142050084
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Entry
142050084 CDS
T11493
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142050084 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142050084 (SKIC3)
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
142050084 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_14
TPR_16
TPR_12
TPR_17
TPR_11
TPR_CcmH_CycH
TPR_8
ANAPC3
TPR_9
ARM_TT21_C
TPR_15
RPN7
Fis1_TPR_C
TPR_30
BTAD
TolB_N
HAT_PRP39_N
HAT_Syf1_M
TPR_20
TPR_5
Motif
Other DBs
NCBI-GeneID:
142050084
NCBI-ProteinID:
XP_074934517
LinkDB
All DBs
Position
Z:1384059..1438649
Genome browser
AA seq
1562 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPDQAK
GAYKKAIELEPNQLLAWQGLANLYEKSNQTDVKGDLADVYQKLLELYESGDKQKWCDVCN
KLVELYHQEQKYLEVAEAWQKLIQKKQEEGAEKAELHQLWKKMIQLLKDSTQNQDNKTEQ
LLLTAFEHAVNSADTIPGADHQNLYKDFIQCLSKFPGETARLEKACNDMMALYPTVSYPL
EVLCLHFIQSGTLSEEALHCFSRLLEMDTSSGPGIIGFGIKCLQEKKYQEAVKSLTEGLQ
KTSQCPAAWHYLAKAQVKIHKYRDAVLSCNQALEALGTPEGPSLRWKNLILQLKAEALIK
KADADAAEEAIKALDQVVDASSDPVLLAIRGQAYLKKGLMDQASKISQELLLSHPDLAES
HALEGFIHYSQKDYKQAERSFLNAIERNAKTAEYHQYLGLTYWFMSDETKKDKGKALTQF
LKAAKLDSYLGSVFCYLGNYYRDIAGDKSRARGCYKKAFELDGTDEESGTAAVDISVELG
DMDAALSILNEVTEKASPGTAKWAWLHRGLYYLRTGQPSQAVADLQAALRADPKDSNCWE
SLGEAYLSRGSYSTALKSFRKASELNPELVYSIYMAAAVEQILGKYENAIATYQQILKKT
EDYVPALKGLGECYLMLGRSALDNYLDRKALDYIEQALEFFTSATKHRSDVSCLWKLLGD
TCTSVHVISPAKVNVQVLGSLLAKNASKQKLNKIELLRLGGRCYGRALKLMPLPSIWCDL
GINYYRQAEHLTAVGTDMNEISDLLEKSLQCLKKAVRLDSKNHLYWNALGVVASCSAIGN
YALAQHSFIKSVQAEKINVVAWTNLGVLYLVTGNIEQAHEAFKVAQSLEPSYLLCWIGQA
LIAEKVGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDKSNRNTELYQYSIVQMNAI
PAAQVVLSKYTERNPDDASAFTMLGYLNEYLQLKKQATDAYERAASLLKNSEDTEKYNMA
MQNYGRLLCAVGQCDKAIEVYTSTPLTEFNGLVGVALAYFKKGLLQESIKAYEKALSLAE
SEQDKAHILTALAIIEYKQNKVDAAKTLLFKCSLKEPSTESLKALCTLGLVKEDATLATA
ALKELLKHEKGGDSIYERCLIASAVYALQGRSVEVQRQVSKAIHSNPDNPALWSLLSRVV
PLYASQKAKAGAVAGSIAQVLDVNHGKEVLLYTTVNHLAAGCSMLEDEKNNPLKNIQKAV
HLCPDNPAAWAVLMAACHAENTVVCLNNTQPKRTDLEMTLVSRVSAKTGGNNLPNNYIRA
LEDWCLCQAVTSLEETGKLSEAEALCTKGLKSCPEHPALFLLLRQVQCKQLLQSHKELPD
TVLEELHKAVMTSSTSVAAWQWLAKVYQSQRMMVGAEMCYRKSLQLASQQGSWNGKLSSL
LRLAMLALEICMTAASNEHWPSLVQEATTEALKLSSCPLAALLQALLQYNRKMGARETRR
MLERVVYQPGNPETIASVARWYLLKHLYAKDDYELIDVLLENAKANGDVRALELNQKLSA
SA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaggaggtgaaggcagcattaaagagtgctagagatgcaatacgaaataaa
gaatataaggaagccttaaaacattgcaaggcagtcttgaagcaagaaaagaataactac
aatgcttgggtatttattggcctggcagctgctgagttagagcagcctgatcaagccaaa
ggagcatataagaaggcaattgaacttgaaccaaaccagttactggcatggcagggatta
gcaaatttatatgagaaatccaaccaaacagatgtcaaaggagacttagcagatgtttac
caaaagctcttggaactctatgaaagtggtgacaagcagaaatggtgtgatgtatgtaac
aagcttgtggagctatatcatcaagaacagaagtacttagaggtggctgaagcatggcag
aaactaatacaaaagaaacaggaggaaggtgcggaaaaggcagagcttcatcagctttgg
aagaagatgatccagctactgaaagacagtacacagaaccaggataataagactgagcag
ttgcttttgactgcatttgaacatgcagtgaactctgctgacactattcctggtgcagac
caccaaaatctttacaaggactttattcagtgcctgtcaaaatttcctggtgaaacagct
aggttggaaaaggcttgtaatgatatgatggctttgtatcctactgtgagttatccttta
gaagtactctgcttgcattttattcagtccggtactttgtcagaggaggctctgcactgt
ttttctaggcttttggagatggacacaagcagtggtccaggaatcattggttttggtata
aaatgcctccaagaaaagaaataccaggaggctgttaagagccttactgaaggtttgcag
aagactagccagtgtccagcagcatggcattatttggcaaaggcacaggtgaagattcac
aaatacagggatgccgtcctgtcctgcaatcaagctcttgaggctcttggaactcctgag
ggtcctagtcttcggtggaagaaccttatccttcagttgaaagcagaggctttgattaaa
aaagctgatgctgatgcggcagaagaagccatcaaagcacttgatcaggtggtggatgca
agcagtgatccggtgcttttagctatcagaggtcaggcttatctaaagaaaggtttaatg
gatcaagcttccaagatttcacaagagcttctgttgtcccaccctgatctggctgagtcc
catgccctagagggttttatccattattcccaaaaggactacaaacaggcggaaagaagt
tttctaaatgctattgaaagaaacgccaaaactgcagagtatcatcagtacctggggctc
acatactggttcatgagtgatgagacaaaaaaagacaaaggaaaagcactcactcagttc
ttgaaggctgcaaaactggacagctacttgggaagtgtcttttgttatttaggtaactac
tacagagacattgctggagataaaagtagagctcgtggttgctataaaaaggcttttgaa
ctggatggcaccgatgaagaatctggaacagcagctgtagacataagcgtggagcttgga
gacatggacgctgctctgtcaatcctgaatgaggtaactgaaaaagcaagtcctggtaca
gcaaaatgggcctggcttcatcgtggactttattacctgagaactggtcagccatcacaa
gcggtggccgatttgcaggcagctctcagggctgatccaaaggattccaactgctgggag
tctctaggggaggcatacctgagcagaggtagctattcaacagctctaaaatccttcagg
aaagcaagtgagctgaacccagagctcgtgtacagcatttacatggctgcagcagttgag
cagattctaggcaaatacgaaaatgctatagctacctatcaacaaatcttaaagaagaca
gaagactatgtgcctgcccttaaaggacttggtgagtgctatctcatgctggggagatca
gcccttgataactatcttgacaggaaggctttggattacatagagcaggctcttgaattt
tttacaagcgcaacaaagcaccgttctgatgtatcttgcctctggaaactgctcggagat
acctgtactagcgtgcatgttatttcaccagccaaagtgaatgttcaagtcctaggatcc
cttctggctaaaaatgcaagcaaacagaagctgaataaaattgagctgctcagactggga
ggaaggtgttacggcagagctttaaaactgatgcctttgcctagcatatggtgtgatctt
ggaataaattattatcgacaagcagagcacctcacagcagtgggcactgacatgaatgag
atcagtgatctgctagaaaagtctctacagtgtctcaaaaaagctgtgaggcttgacagc
aaaaaccatctttattggaatgcacttggtgtagttgcttcctgtagtgctattgggaat
tatgctcttgctcaacattcgttcatcaaatctgtccaagctgagaaaatcaatgttgtt
gcctggaccaacttgggcgttttgtatctggtgactggaaatattgagcaagctcatgaa
gccttcaaggtagctcagtctctggagccttcctacttactgtgctggattggccaggct
ctaattgcagagaaggtgggcagctatgacactatggatctcttcaggcacaccactgaa
ctcagtatgcatactgagggagcaaaaggctacgcacactgggtatgttcaacgctgcag
gataaaagcaacagaaacactgagctataccagtacagcattgttcaaatgaatgctatt
ccagcagcccaggtggtgttgagcaaatatacagaaagaaatccagacgatgcatctgct
ttcacaatgcttggttatttgaatgagtacctgcagctgaaaaagcaagcaacagatgcc
tatgagagggcagcttcattgctgaaaaactctgaggatactgagaaatataatatggca
atgcaaaactatggcaggttactgtgtgctgttggtcagtgtgataaggctattgaggtc
tacacatcaacgcccctgactgagttcaatggcctggttggggtagcattagcctacttc
aagaaaggactcttacaagaaagtatcaaagcctatgaaaaagctttgtctcttgctgag
tctgaacaagataaagcacatattctgactgccttggcaataatagagtataaacagaac
aaagtggatgctgcgaagacactgctgtttaaatgctcattaaaggaacctagtacggaa
agtctgaaggctttgtgcacgctaggactggtaaaggaggatgctacacttgcaacagca
gccctaaaagaattactgaagcatgaaaaagggggcgatagcatttatgagaggtgcctt
attgcatctgctgtttatgcattgcaaggtagaagtgtggaggtccagagacaagtctcc
aaagcaatacatagtaacccagataatcctgccctctggtctcttctgtctcgagttgtt
cctctgtatgcatcacaaaaggcaaaagcgggagctgtggcaggaagcattgcacaagta
cttgatgtaaaccatggaaaggaagtcctgctgtatactacagttaatcatctggcagca
ggatgttccatgttagaagatgagaaaaacaatcctctgaaaaatattcagaaggccgtc
cacctctgtccagataatcctgctgcctgggcagtgctaatggcagcttgtcacgctgaa
aacaccgttgtctgtctaaacaacactcagccgaagcgaacggatctagagatgacactt
gtatctagagtttcagcaaaaactggaggaaataaccttccaaataattatatccgggct
cttgaagactggtgtctgtgtcaagctgttaccagtctagaagagactggtaagctctca
gaagccgaagctctttgcaccaagggtttaaaaagctgccctgagcacccagctctgttt
ttgcttttgagacaagttcagtgtaagcagctgttgcagtctcacaaagaacttccagac
accgtcctggaggagcttcacaaggcggttatgaccagttcaacttcagttgcagcctgg
caatggctggcaaaagtatatcagtcccaaagaatgatggttggagcagagatgtgttac
agaaagagtctgcaattggcatcacagcagggcagctggaacgggaagttgtcgagcctg
ctgaggctagctatgcttgcactggaaatctgcatgactgctgcctcaaatgagcactgg
ccatccttggtccaggaggcaacaactgaagctttgaaactttcttcttgccccctggca
gctcttctacaagcactgctgcagtataatcgcaaaatgggagcaagggagactcgtcga
atgttggaaagagttgtgtatcaaccggggaatccagaaaccatagcgtcagtggcacgc
tggtacctcctgaaacatctgtatgccaaagacgattatgaattaatagatgtgctttta
gaaaatgccaaagctaatggagatgttagagctctggaactaaaccagaagttgtcagca
agtgcctag
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integrated database retrieval system
