Phalacrocorax aristotelis (European shag): 142051677
Help
Entry
142051677 CDS
T11493
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
parx Phalacrocorax aristotelis (European shag)
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
parx04121
]
142051677 (PDZRN4)
Enzymes [BR:
parx01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142051677 (PDZRN4)
Ubiquitin system [BR:
parx04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
142051677 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_4
zf-RING_5
zf-C3HC4_3
zf-rbx1
PDZ_Tricorn
TRAF3_RING
Prok-RING_4
IBR_1
Motif
Other DBs
NCBI-GeneID:
142051677
NCBI-ProteinID:
XP_074937097
LinkDB
All DBs
Position
1:complement(186304135..186557133)
Genome browser
AA seq
1047 aa
AA seq
DB search
MGFDPSRFAAPVAAELQCKLCGRVLEEPLSTPCGHVFCAGCLLPWAARRRRCPLRCRPLA
AAELRPVLPLRSLVQKLEVKCDYSPRGCGRTVLLRELPAHLAACRYGPPAGPAEPEPRGG
RPPSPDRPAGGSAGQPRRPAPGAAPRPRAGGGHRCLRALRGGGGGPEPAPELKREALRWS
RREKSLLAQLSALQSEVQLTARRYQAKFGQYMSHISSIARDLAGGQPGKGGEPKPLTIML
HRENDTLGFNIIGGRPNQNNQEESAEGIYVSKVLENGPADKTEGLQIHDKIIEVNGKDLS
KATHEEAVEAFRNAKEPIVVQVLRRAPVSKTHGSSQDVRFVDASTQTDITFEHIMALAKL
RPSTPPVPDICPFLLSDSCHSLHPAEHEFYEGNEYLSSLPADADRAEDFEYEEVELCRIS
SQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAARDGRIREGDRILQINGQDVQNREEAVA
LLSSEECKKIVLLVARPEMQLEEGWLDDERNEFLEELNLEMLEEQHNEAMQYTANEVEQP
KKHEEEDGTTDTATSSSNNHEKDSGVGPTDESLRNDESSEQENAPEEQNSATLQSKRELG
HSQDTLGSVELQCNESFVSGEYIESDFIGNPEEECERFRQLLELKCKIRNHGEYDLYYSS
STIECNRREQDGVEHELQLLNEELRNIELECQNIMQAHRLQKVRDQYGDIWALHDEGFRN
YNTSIDVQRGKLDDIMEHPEKSDKDSSSAYNTAESCRSTPLTVERSPDNSLQRMISITNR
KNLRSTIVASQSSSGQSNRETTSPKTKPTEQNSAAEEAVLASESSKFTDQEKQSSEHIPY
LSPYHSSSYRYGNIPAHAKHYQSYMQLIQQKSAVEYAQSQLSLVSMCKDSQKCAEPKMEW
KVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQH
LVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMT
IQELMTHGAKSPDGTRVHNAFLSVTTV
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgacccgtcgcgcttcgcggcgccggtggcggcggagctgcagtgcaagctg
tgcgggcgggtgctggaggagccgctgtccacgccgtgcgggcacgtcttctgcgccggc
tgcctgctgccctgggcggcgcggcggcggcgctgcccgctccgctgccggccgctggcg
gccgccgagctgcgccccgtcctgcccctccgcagcctcgtccagaagctggaggtcaag
tgcgactacagcccgcggggctgcggccgcaccgtgctgctgcgggagctgcccgcccac
ctcgcggcgtgccgctacgggccgccggccggccccgccgagccggagccgcggggtggg
cgcccaccctcccccgaccgcccggcgggcggctccgcggggcagccgcggcggcccgca
ccgggggcggccccgcggccgcgggcgggcggcgggcaccgctgcctgcgggcgctgcgg
ggcggcggcgggggcccggagccggctcccgagctgaagagggaggccctgcgctggagc
aggagggagaagtcgctgctggcgcagctctcggcgctgcagagcgaggtgcagctgacg
gcgcggcggtaccaggcgaagttcggccagtacatgagccacatcagcagcatcgcccgg
gacctggcgggcggccagcccggcaagggaggagaacccaaaccgttaacgatcatgcta
caccgagaaaatgatactttgggattcaatattataggaggacgacccaatcagaacaat
caggaggaatccgctgagggaatttatgtgtcaaaggttttggaaaatggacctgcagac
aaaacagaaggcttgcaaattcatgacaagattattgaggtcaatgggaaggacctctcc
aaggccactcacgaagaggcagtggaagcttttcgcaacgccaaggagccaattgtagtt
caggttttacgacgagccccagttagcaaaactcacggtagctctcaggatgttcggttt
gtggatgccagcactcagactgacatcacttttgagcacattatggctctggccaaacta
aggccttccacaccgccagttcctgatatctgcccctttctactttcagacagctgccat
tctcttcacccagcggagcatgaattctatgaaggtaatgagtatctttccagcctgcct
gctgatgcagatagagcagaggactttgagtatgaggaggtggagctgtgccgcattagc
agccaggagaagctggggctgactgtctgttacagaactgatgacgaggaggacacaggg
atctatgtcagtgaggttgatccaaacagcattgctgccagagatggccggatccgtgaa
ggagatcgcattttgcaaataaatggccaagatgtccagaatcgggaagaggcagtggca
ttgctctccagtgaagaatgcaagaaaatcgtgttgctggtcgcaagaccggagatgcag
ctggaagaagggtggctggatgatgaaaggaatgaattcttagaagagttaaacttggaa
atgttggaagagcagcataatgaagcaatgcagtacacagccaacgaggtggagcagcca
aagaaacacgaagaggaggatggcactacagacactgcaacctcatcatccaacaatcat
gagaaggacagtggggtgggacctacagatgaaagtctgcgtaatgatgagagctcggag
caagaaaatgcacctgaggagcagaacagcgctaccctgcagagcaagcgggagctgggc
cacagccaggatacgttaggaagtgtggagctccagtgcaatgaaagctttgtgtctggg
gaatacattgagtctgacttcataggaaacccagaggaggaatgtgaaaggtttcggcag
ctgttggaactgaagtgcaagattagaaaccacggggagtatgatctgtattactcgagc
agcacaatagagtgcaacagaagagagcaagacggagtggagcatgagctgcagctactc
aatgaggaactgaggaacattgaactcgaatgtcagaatattatgcaagctcaccggctc
caaaaggtgagggatcagtatggagacatttgggctttacatgacgaagggttcaggaat
tataacaccagcatagatgtacaaagaggcaaactggatgacatcatggagcaccctgag
aagtccgacaaggacagctccagcgcctacaacacggctgaaagttgcaggagcactcca
ctgactgtggagcgatcccctgataactctctccagaggatgatcagcataaccaacagg
aaaaacctgaggagcacaatcgtggctagtcagtcatcctcaggacaaagcaacagggag
acaacctcacccaaaaccaaacccactgagcaaaacagtgctgctgaggaagcagtgctg
gcatcagaaagcagcaaattcacagaccaggaaaagcagagcagcgagcacattccctac
ctttctccatatcacagctcttcttacaggtatgggaatatacctgctcatgcaaagcat
tatcaaagttatatgcaactgatccagcagaagtctgctgtggagtacgcccaaagccag
ctgagcctggtgagcatgtgcaaagactcgcagaagtgtgcagagcccaagatggaatgg
aaagtgaaaataaggagtgacgggacgaggtacatcacaaagagaccagttcgagacaga
atcctgaaggaacgtgccttaaaaattaaagaggagcgcagtgggatgacaacagatgat
gatacgatgagtgagatgaagatgggtcgctactggagcaaagaagagcggaagcagcat
ttggtgcgagctaaggagcagaggaggcggcgggagttcatgatgaggagcaggctggag
tgtcttaaggaaagtccacagagtggcagcgagggcaaaaaggaaattaacattattgaa
ctgagtcacaaaaagatgatgaaaaagagaaacaagaaaatcttggacaactggatgaca
atccaagaactgatgacacacggtgctaaatctccagatggcacaagagtgcacaatgcc
tttttatcagttactactgtatga
DBGET
integrated database retrieval system
