Phalacrocorax aristotelis (European shag): 142051898
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Entry
142051898 CDS
T11493
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03013
Nucleocytoplasmic transport
parx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142051898 (UPF2)
03015 mRNA surveillance pathway
142051898 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142051898 (UPF2)
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142051898 (UPF2)
mRNA cycle factors
P-body specific factors
142051898 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
142051898
NCBI-ProteinID:
XP_074937706
LinkDB
All DBs
Position
1:211967641..212040198
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AA seq
1271 aa
AA seq
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MPAERKKPANMEEKESQLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKVPEDKKKKL
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRRVKTVAEKFNLRFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPAPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSGKDESRDSKDAKDNKEAPGSEDLELELENLDINDDPLELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRLVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaatctcagttaaataat
aaagaaaaggaatttagtgaaaggcgacctgtgagcaccagggagaagccgaaagaggat
gtcaaggttggcatgaagagagagactttaaaggttcctgaagataaaaagaaaaaactg
gaagaggataaaagaaaaaaagaagacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaagagcaaaagaagaaagaagaggaagaaaaaaagaagcttgaagaagag
gagaaaaagaaacaagaggaggaagagaaaaagaaacaagaagaagcagctgctcaactg
aaagaaaaagaggaagcacatcagctccaccaggaggcttgggagcgccatcaggcaaga
aaagagcttcgcagcaaaaaccagaatgcaccagacaatcgccctgaggaaaacttcttc
agcagactagattccagtttgaagaagaacacagcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcgcatgactttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaagccaaactgaaaatatcagacgtgaactgc
gctgtgcatttgtgttccctctttcaccagcgctatgctgattttgctccttcacttctt
caggcttggaaaaaacattttgaagcaaggaaagaagagaagactcccaacattaccaag
ttaagaactgatctgcgtttcattgcagaattgacaatagtcgggattttcactgacaag
gaaggtctgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggagagtaaaaactgttgcagagaagtttaacttgaggtttcctcctagt
gagataattagtccagagaaacaacagcccttccagaatttgttgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagcttcaaaatattgaaagacaaaac
aggcgcattcttcactccaagggagagctgagtgaagatcgacacaagcaatatgaggag
tttgcaatgtcctaccagaagctgttggcaaattctcaatctctagctgaccttttggat
gaaaacatgcccgaccttccccaagagaaaccagcacctgaggaacatggacctggtatt
gatattttcacaccaggaaaacctggtgaatatgacctggagggaggcatctgggaagat
gaagatgctagaaacttctatgagaatctcatcgacttaaaggcttttgtgccagcaatt
ttgtttaaagataacgaaaaatgttcccagaacaaggattccggcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcacctgggagtgaggatttggagttggag
ctggagaacctggatattaatgatgatcctctggagttagactgtggagatgaggccgaa
gatcttacaaaaaagcttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttaaaacttatagtagatgcttttcttcagcaacttccaaattgtgtcaaccga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacaaaagccaacaga
agaaaactagtacgagcacttttcatagttcctcgacaaaggttggatttgctaccattt
tacgcaaggctggttgccacgttgcatccctgtatgtctgatgtagcagaggatctttgt
tctatgctgaaaggggatttcagatttcatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagatttatcggtgagcttaccaagtttaagatgttctccaaa
aatgatactctgcactgtctaaagatgcttctgtcagacttctctcatcaccatattgaa
atggcatgtactctgctggaaacctgtggaagattcctctttcgatcaccggaatctcac
ttaagaaccagtgtccttttggaacaaatgatgagaaaaaaacaagcaatgcatcttgat
gcacgctatgttacgatggtagaaaatgcctattactactgtaatccccctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaggagtatattcgtaagcttctttacaag
gatctctccaaggtcaccactgagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcagaagtaaaagactatgttatatgctgtatgatcaacatctggaatgtcaagtat
aacagtattcactgtgtagccaaccttttagcagggttggtcctttaccaggaagatgtc
ggaattcacgttgtggatggagtgctagaagatattcgactaggaatggaggttaaccag
ccaaagtttaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattat
cgaatggtggaatcagctgtaatatttcgaactctctattctttcacatcatttggtgtg
aaccctgatggcagtcctagtccactggaccctccagagcatcttttcagaatcagacta
gtttgtactattctcgacacctgtgggcaatattttgacagaggatccagcaaacgaaaa
cttgattgcttccttgtatattttcagcggtatgtttggtggaaaaaaagtctggatgtt
tggacgaaagaccacccatttcctatagacatagactatatgatcagcgacacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctatcaggctggtgcaa
gacttggaacgagaatttttaataaaattaggaattgtgaatgacaaagattccaaagat
tccattactgaaggagagaatctggaggaggatgaagaggaggaggaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtcaatgagcctgaagaagaggagggctct
gacaatgaggaagaagaaggtgaagaagaggaggaagaaaacacagattatcttacagac
tcaaataaggaaaatgaaactgatgaggagaacacagaagtaatgattaagggaggagga
cttaagcatgtcccttgtgcagaagatgaggacttcattcaggcattggataaaatgatg
ctggaaaatcttcagcaacggagtggcgaatctgttaaagtacatcagttggatgttgct
attcctctgcatctcaaaagtcagctgaagaagggtcccccgcttggaggtggggaagga
gagtcagaatctggagacacaatgccatttgtcatgttaacacgaaaaggcaacaaacag
cagtttaagatcctaaatgttccaatgtcttcccaacttgctgcaaaccattggaaccaa
cagcaagctgaacaggaggagagaatgaggatgaaaaagctcactttggatatcaatgaa
cggcaagaacaagaggactaccaggaaatgttgcagtctctggcccagcgtccagctcca
gccaatactaatcgtgaacggcggcctcgttaccagcatccgaagggagcacctaatgca
gatctaatctttaaaactggtgggaggagacgttga
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