Phalacrocorax aristotelis (European shag): 142052872
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Entry
142052872 CDS
T11493
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03018
RNA degradation
parx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142052872 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
142052872 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142052872 (LSM5)
03041 Spliceosome [BR:
parx03041
]
142052872 (LSM5)
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142052872 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
142052872 (LSM5)
Spliceosome [BR:
parx03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
142052872 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
142052872
NCBI-ProteinID:
XP_074939727
LinkDB
All DBs
Position
2:54566555..54570276
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AA seq
91 aa
AA seq
DB search
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaacgcgaccaccaacccctctcagctgctgccgctcgaacttgtggacaaa
tgcataggctcacgcatccatattgtgatgaagagtgataaagaaattgttggaacactt
ctaggatttgatgacttcgtcaatatggtgttagaagatgttacagaatttgagattaca
cctgagggcagaagaatcacaaagctagaccagatcttgctaaatggaaataacataaca
atgctggttcctggaggagaaggacctgaagtataa
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