Phalacrocorax aristotelis (European shag): 142054339
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Entry
142054339 CDS
T11493
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
parx Phalacrocorax aristotelis (European shag)
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
parx03041
]
142054339 (DDX1)
03016 Transfer RNA biogenesis [BR:
parx03016
]
142054339 (DDX1)
Enzymes [BR:
parx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142054339 (DDX1)
Spliceosome [BR:
parx03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
142054339 (DDX1)
Transfer RNA biogenesis [BR:
parx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
142054339 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
142054339
NCBI-ProteinID:
XP_074942882
LinkDB
All DBs
Position
3:complement(14083625..14103735)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYIGLCKAPDGHVVKSQHSGNAQVVQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVLVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcggaaatgggtgttatgcctgagatagctcaagcagtagaggagatg
gactggcttcttcctacagatatccaagcagaatccatcccgctgatcctgggaggtggt
gatgtacttatggctgctgaaacggggagtggaaaaactggtgctttcagtattccagtt
atccagattgtttatgaaacactaaaggaccagatggaaggcaagaaagggaaagcaact
attaaaactggtggggcagtgctcaataaatggcagatgaacccatacgatagaggatca
gcttttgcaattggatcagatggtttgtgttgccaaagcagagaggtaaaagaatggcat
ggatgcagagcaacgagaggcgtgactaaagggaaatactactatgaagtttcctgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttcactagatttgggcact
gataaatttggctttggctttggtggaactggtaagaaatctcacaacaagcagtttgac
agctacggggaggaattcactatgcatgatacaattgggtgttatctagacatagataaa
ggacaaataaaattttccaaaaatgggaaggaccttggccttgcatttgaaatcccacca
cacataaggaaccaagcactttttgcagcttgtgtactcaagaacgctgaattgaaattc
aattttggtgaagaagacttcaagtttccaccgaaagatggctatattggcctttgcaag
gctcctgatggtcatgttgtaaaatcacagcactcaggaaatgcacaagtggttcaaaca
cagaaccttccaaatgctccaaaagcattgattgtggaaccatcaagagagcttgcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgtcgataatcccaaattaagggaa
ctgttgattattggtggggttgctgcaagagatcaactctctgtactggaacaaggagtg
gatattgttgttggaactcctggaagacttgatgacctggtctcaacgggaaagcttaat
ttatctcaagttagattcctggttctggatgaagctgatggccttctcctccaaggatat
tcagatttcataaacaggatccacagtcaaattcctcagataacttcagatggaaagaga
cttcaggtgattgtgtgctctgcaacactacattcttttgatgtgaaaaaactatctgaa
aagatcatgcattttcctacctgggttgatttgaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcttgtaaatccaaaagctgacaaactctgggaaaggcttggc
aagaatcatatcaggactgatgaagtacatgcaaaagacaatacacgacctggtgctaac
actccagaaatgtggtctgaggctattaaaattctaaaaggagaatatactgttcgggca
atcaaagaacacaagatggaccaagccattattttctgcaggactaaaatagactgtgat
aatatggagcagtacttcatccaacaaggtggaggccctgataggaagggacatcagttc
tcatgtgtctgtctgcatggtgacagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacagatgttgctgctagaggaattgat
attcatggtgttccgtatgttatcaacgtcacactccctgatgaaaaacagaactatgtt
catcgaattggaagagtaggcagagctgagaggatgggtctggcaatctcccttgtagca
aaagagaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaagggtgttacaat
actagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggc
gagattgaagaacacttaaactgcactattgcccaagttgaaccagacataaaagtacca
gtagatgattttgatgggaaagttacatatggacagaaaagagctctgggtggtgggctg
tataaaggccatgtggatattctggcacctacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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