KEGG   Phalacrocorax aristotelis (European shag): 142054462
Entry
142054462         CDS       T11493                                 
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
  KO
K08131  collagen type IX alpha
Organism
parx  Phalacrocorax aristotelis (European shag)
Pathway
parx04510  Focal adhesion
parx04512  ECM-receptor interaction
parx04518  Integrin signaling
parx04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:parx00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    142054462 (COL9A1)
   04518 Integrin signaling
    142054462 (COL9A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    142054462 (COL9A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    142054462 (COL9A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:parx00535]
    142054462 (COL9A1)
Proteoglycans [BR:parx00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   142054462 (COL9A1)
SSDB
Motif
Pfam: Collagen Laminin_G_2
Other DBs
NCBI-GeneID: 142054462
NCBI-ProteinID: XP_074943155
LinkDB
Position
3:complement(32957803..33030129)
AA seq 919 aa
MKSNWKITAFFYVCSFLWSLISATIQHQSRLPVILGASQRTDLCPTIRIGQDDLPGFDLI
SQFQIEKAASQGIIQRVVGSTSLQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWKIQDSSGKEQVGVHLNGQMKSVEFSYKGVDGSLYTASFLHLPFLFDSQW
HKLMISVEANSVTLFIDCIKIESLNIKPKGKISIDGFAVLGKLKNNPEISVPFEIQWMVI
HCDPLRPQREGCGELPARISQTVIERGLPGPPGPPGPPGPPGVPGIDGIDGERGPNGPPG
PPGPDGDAGKPGSPGLPGEPGPDGFTGPDGSRGATGPKGQKGEPGLPGARGLPGKGLLGP
PGPAGAAGLPGEVGRAGPPGDPGKRGPPGPPGPPGPRGTIGLQDGDPLCPNACPPGRPGH
AGLMGMKGQKGSKGESGEPGRQGYKGEEGDQGPSGEVGAQGPPGILGIRGINGITGPKGT
KGARGLDGEPGPQGLPGAPGDQGQRGPLGEAGPKGERGPQGTRGINGLPGPKGEPGLPGV
DGREGIPGMPGAKGEPGKPGAPGDAGLQGLPGLPGSPGVKGIPGPKGNRGPPGVPGLLGN
SGKQGEQGPEGEAGPTGPRGPPGSRGEPGPAGPPGLPGKLGPQGDIGLPGLPGPPGLPGG
KGDRGSVGEPGPKGEQGAPGAEGDGGEKGDLGDMGLPGAKGAVGNPGDPGSRGPEGSRGL
PGMEGPRGSPGPRGLQGEQGAPGLPGSQGPAGKEPTDQHIKQVCMRVMQEQLAQLAASLK
RPEFGAPGLPGRPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEPGERGD
RGFPGRGLKGHPGPRGLPGEPGKPSYGREGRDGERGLPGVAGQPGVPGPPGPPGPPGYCE
PSSCRMQAGQRAGKNMKGP
NT seq 2760 nt   +upstreamnt  +downstreamnt
atgaaaagcaactggaaaattacagctttcttttacgtgtgtagttttctgtggtctctc
atctcagccaccatccagcaccaatcaagactaccagtcattctgggtgccagtcagaga
actgatctctgcccaacaatcagaattggccaagatgacttaccaggctttgacctgatt
tctcagttccaaatagaaaaagctgcttcccaaggaattatccagagagtagtgggctcc
acttctctccaagtggcttataaattgggacccaatgtagacttcaggatcccaacaagc
gccatatattccaacggattgcccgacgaatattcctttctaactacttttcggatgact
ggggccacacttcagaaatactggactatttggaagattcaggattcttcaggaaaagaa
caagttggagtccatcttaatggccaaatgaaaagtgttgagttttcttataaaggagtg
gatggaagtctctatactgcatcatttttgcatttgcctttcttgtttgactcccaatgg
cacaagcttatgataagtgtggaagcaaacagtgtcacactttttattgactgtattaaa
atagaatccttaaacataaaaccaaaagggaagatcagcattgatggctttgctgtgctt
ggaaaacttaaaaataatcctgaaatttcagttccgttcgaaatccagtggatggtgatt
cactgcgaccccctgcgaccccagcgcgaaggctgcggtgagctgccggcccggataagc
cagacggtaatcgagagaggtctccctggtccaccaggccccccaggtccaccagggcca
ccaggagttcccggtattgatggcatcgatggggagagaggtccgaatggcccccctggt
ccaccaggtccagatggggatgcaggcaaaccaggatcccctggcctacctggagagccg
ggacctgatggattcacaggacctgatggctcacgtggagctacaggaccaaaaggacag
aagggcgagccaggactgccaggtgctcgtggactgccgggcaagggccttcttggacca
cctggtccagctggtgcagcaggacttcctggggaagtaggtcgcgctggtccacctgga
gatccaggaaaaagagggccaccagggccaccaggaccaccaggccctcggggaacaatt
ggcctgcaagatggggatccattgtgtcccaatgcttgtccacctggccgcccaggacat
gctggcttaatgggaatgaagggacagaaaggttcaaaaggagagtctggagaaccagga
agacaaggttataagggtgaagaaggggaccaaggacccagtggtgaagtgggagctcaa
ggccctccaggcatcctaggtatcagaggtataaatggtataacaggacctaaaggtacc
aaaggagctcgtggacttgatggtgagcctggtccccaaggtcttcctggtgcacctggg
gatcagggacagagaggtccactgggagaggcaggtccgaagggagagaggggccctcaa
ggtacaagaggaataaatggtctccctgggcctaaaggagagcctggtttaccaggagtt
gatggccgtgaagggatccctggaatgcctggagcaaaaggtgaaccaggaaagcctgga
gctccaggcgatgcagggcttcagggactgccaggtttgccaggctctccaggtgtgaaa
ggcattcctggtccaaagggtaatagaggtccccctggggtgccaggtttgttgggaaat
tctggtaaacagggtgaacaggggccagagggagaagcaggtccaacaggaccccgggga
ccaccaggtagcagaggagagccaggtcctgcaggtcctccaggtttaccagggaaattg
ggtccccagggtgatattggacttcctggactgccaggtcctccaggcctgcctggtggt
aagggtgaccggggttcagtgggtgaaccaggacctaagggtgaacaaggtgcacctgga
gcagaaggagatggaggagaaaagggtgacttgggtgatatgggattaccaggagcaaag
ggagctgttggtaatcctggagaccctggttcccgtgggcctgagggaagtcgcggtctg
cctggcatggaagggccacgaggctcaccgggaccacgtggcttgcagggtgagcagggt
gccccaggtctgcctggcagccaaggtccagctgggaaagaaccaaccgatcagcacatt
aagcaggtttgcatgagagtcatgcaagaacaactagctcagctggcagccagtcttaag
aggccagaatttggtgctccaggtcttcctggccgaccagggccaccaggtgcgccaggg
cctgctggtgaaaatggcttcccaggacagcttggaccccgtggcttgcctggccttaaa
ggtccccctggtgagattggtcgtaaagggcctaaaggtgaaccaggagaaagaggagac
agaggatttccaggcagaggactgaaaggtcaccctggaccaagaggtcttccaggtgaa
ccaggcaaacccagctatggcagggaaggccgtgatggtgaacgaggtctccctggggtg
gccggtcagcctggggttcctggtcctcctggacctcccggccctcctgggtactgcgag
ccgtcgtcttgcagaatgcaggctggacagagagctggtaagaacatgaaagggccatga

DBGET integrated database retrieval system