Phalacrocorax aristotelis (European shag): 142054882
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Entry
142054882 CDS
T11493
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04120
Ubiquitin mediated proteolysis
parx04137
Mitophagy - animal
parx04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
142054882 (PRKN)
04120 Ubiquitin mediated proteolysis
142054882 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
142054882 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
parx04131
]
142054882 (PRKN)
04121 Ubiquitin system [BR:
parx04121
]
142054882 (PRKN)
03029 Mitochondrial biogenesis [BR:
parx03029
]
142054882 (PRKN)
Enzymes [BR:
parx01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
142054882 (PRKN)
Membrane trafficking [BR:
parx04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
142054882 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
142054882 (PRKN)
Xenophagy
Other xenophagy associated proteins
142054882 (PRKN)
Ubiquitin system [BR:
parx04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
142054882 (PRKN)
Mitochondrial biogenesis [BR:
parx03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
142054882 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD
Rcat_RNF216
Rad60-SLD_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
142054882
NCBI-ProteinID:
XP_074944153
LinkDB
All DBs
Position
3:complement(75526054..76309490)
Genome browser
AA seq
528 aa
AA seq
DB search
MHLSALERAWEPNQKSILCKLCRERTRGRAHELSNPYCFPSAGQKDATGGSKLEKEFRTS
KWECIQVFVRFNSSHGFPMEFGSDASILQLKEAVAQRQGVPADQLRVIFAGRELSNDLTL
QNCDLAQQSIVHIVQGPQKNSHNKDESEDNRAGGILKSLEREPESLTRVDLSTNILPSHS
AGLAVILDATKSSISLPFEKSGAASYNSFYVFCKNFCQAVKPGKLRVRCSVCKQGTLTLT
RGPSCWDDVLISNRIRGVCQSERCNGNIAEFYFKCGAHPTTDSETSVALNLITTNSRCIT
CITCTDIRSPVLVFQCVHRHVICLDCFHLYCVTMLNDRQFIHDPELGYSLPCVAGCPDSL
IKELHHFRILGEEQYNRYQRYGAEECVLQMGGVLCPTPGCGAGLLPEPGLRKIVCEPGNG
IGCGFVFCRECKEEYHEGECSSLLSTQGAMAQKGYVVDERAAMQARWEEASRETIKKTTK
PCPSCNIPVEKNGGCMHMKCPRPQCRFEWCWNCGLEWNRTCMGDHWFD
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatctgcattagagagagcatgggaaccaaatcagaaatcaattttgtgtaaa
ctgtgtcgagagagaactagggggagagcacacgagctctcaaatccctactgtttccca
tctgcaggtcagaaggacgcaacaggtggaagtaagttggaaaaggaattcaggacaagc
aaatgggaatgcattcaagtgtttgtcaggttcaactccagccatggcttcccgatggag
tttggttcagatgccagcatcctccagctgaaggaggcggttgcccagcgacagggagtt
ccagctgatcagctgcgggtgatttttgcagggagggagctcagcaatgacttgacactg
cagaactgtgacctggcccagcagagtatcgttcatattgttcagggtccacagaagaac
agtcacaacaaggatgagtcagaagacaaccgtgctggaggtattctgaaatccttggaa
agagaacctgaaagtctaactcgtgtagatctcagcaccaacatcctcccatcacactct
gcagggctggctgttattctggatgccacaaaaagcagcatttctcttccctttgaaaaa
tcaggtgcagctagttacaacagtttttatgttttttgcaaaaatttctgccaagctgtg
aaacctgggaaactgagggtccgctgcagcgtgtgtaaacaaggaacactgacgttgaca
aggggtccatcttgctgggatgatgtgctgatttccaacagaataagaggtgtttgccag
tccgaaaggtgcaatggaaatatagcggagttttactttaaatgtggagcacacccaacc
accgacagtgaaacatctgtggctttgaacctcattacaacaaacagtcgctgtatcaca
tgtataacatgcacagatattaggagtcctgtgcttgtgttccagtgtgtgcatcgccat
gtcatttgcctagactgtttccatttgtactgtgtgactatgctgaatgaccgtcagttc
atccatgacccggagcttggctattccctcccttgcgtagctggctgtccagactccttg
attaaagagcttcatcacttcaggattctgggagaagaacagtacaaccgctatcagcgc
tatggggctgaggagtgtgtgctgcagatgggaggagtgctgtgtccaactcccggatgt
ggagcgggtttgcttcctgaaccaggattgaggaaaattgtatgcgaaccaggcaacgga
ataggctgtgggtttgtgttctgccgtgaatgtaaagaagaataccatgaaggggaatgc
agctctctcctcagcacacagggagccatggcccagaaggggtacgtagttgatgaacgt
gcagccatgcaagctcgatgggaagaggcatctagagaaacaatcaagaagacaaccaag
ccatgccccagctgcaatattccagtagaaaaaaatggtggctgcatgcacatgaaatgt
cctcgccctcagtgcagatttgagtggtgctggaactgtggcctggagtggaacagaacc
tgcatgggagatcactggtttgactag
DBGET
integrated database retrieval system
