Phalacrocorax aristotelis (European shag): 142056004
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Entry
142056004 CDS
T11493
Symbol
SYNPO2
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
142056004 (SYNPO2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
parx04990
]
142056004 (SYNPO2)
Domain-containing proteins not elsewhere classified [BR:
parx04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
142056004 (SYNPO2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Calsarcin
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
142056004
NCBI-ProteinID:
XP_074946222
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Position
4:5815469..5914228
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AA seq
1273 aa
AA seq
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MLPNCTRKMGTGDYLCIAMSGGAPWGFRLQGGKEQKQPLQIAKVRSKSKAAKAGLCEGDE
VVSINGKPCGDLTYAEVIILMESLTDVLQMLIKRSSNGINETLSAERENGRHDNIKNDNY
RESTTLQINTAKEIPHGDLCITEIYSETHQGAGESNTHFSEMKQETIQSHRITPKVIGSS
KVLETDEAAFRGKTEERRPGTMVELQLSLSNDAHKSTNAPTVTLLGAEKCTPSGRGPSVQ
QDGTSPVIAIPLGVKEGNIQWSSKVVQFSSGKEVKRIQSAAPSLPRVEVILDCSDREKEA
HRSLAERGCVDSQEEGGQSEAPPSLLSFAISSEGTEQGEDDQHSERDHRPLKHRARHARL
RRSESLSEKQVKEAKSKCKSIALLLTAAPNPNSKGVLMFKKRRQRARKYTLVSYGTGELE
RDEDEGEEGEGEEGDKENTFEVSLLATSESEIDEDFFSDIDNDGKIVTFDWDSGLPEVEK
KTKSGDEMQTLPESTGKGALMFAKRRQRMDQITAEQEEMKARTVHTEERREAVSENFQKV
SSSVYQTKEEEISRQQTCVSKSYTDMSQNHSKTVQQNGFGLAPDTNLSFQSSVAQKAAPL
NKTAKPFPSGVQNRAAAPFSPTRNVTSPLSDIPAPPPYCSISPSPEALYRPVSAPAASRA
APNVWSFTEPTERIASRDERIAVPAKRTGILQEAKRRSTSKPMFTFKEAPKVSPNPALLS
LVHNAEGKKGTGAGFESGPEEDYLSLGAEACNFMQTQASKQKAPPPVAPKPSLKVSPTAG
TPVSPVWSPPAAASNKPPSFPAPASPQAAYPAPLKSPQYPHSPAHPPSTLNLAGPFKGPQ
ATLASPNHTPKTTPVTPSAGGTKPPFEMPPAMSGKGAQLFARRHSRMEKYVVDSETVQAN
MARASSPTPSLPASWKYSSNVRAPPPVAYNPIHSPSYPPAATKSSSKSTAATKNTKRKPK
KVLNALDIMKHQPYQLDASLFTFQPPSTKESLAIKQTSKVYTSKQALPLRPPSAGSPTNA
RASSVYSVPAYSSQPSFQSNASIPVNESYSPTGYSAFSKPETTTSSLFTAPRPKFSAKKA
GVTAQERSSGRSLSLPGRPSSFISRAMSPTSPLIFQPAPDYFSKPDTTADRPGKRLTPWE
AAARSPLGLVDEAFAPQSMQESIAANVVSAARRKTLPEPPDEWKQKVSYEPPAPSSSVAL
LGGKKSGIVSPPKSSLSAPSATTQAGSQLQYAYCSQRSRTDPDIMSMDSRSDYCLSTADS
NYNPQPRGWRRPT
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctaactgcaccaggaaaatgggcacaggggattatctctgcattgctatgagc
ggaggggcgccttggggctttagattgcaaggtggcaaggagcaaaagcagcctttgcaa
atcgccaaggttcgcagcaagagcaaagcagctaaggctggactgtgtgagggagatgag
gtggtgtctatcaatggcaagccttgtggagacttaacctatgctgaagttatcattcta
atggaaagcctgactgacgtcctgcagatgcttatcaagagatcctccaatggaataaat
gaaaccttgagcgctgaaagagaaaatggaaggcacgataacataaaaaatgacaactat
agggagagtactacactgcaaattaacacagcgaaagagataccccatggagatctatgc
atcacagagatatacagtgagactcaccagggagcaggagaaagcaacacacacttttct
gaaatgaaacaagagaccatacaaagccacagaattactcctaaagtgataggcagctcc
aaagtgctcgagacagacgaggctgctttcagagggaagacagaagaaagaaggccaggt
actatggttgagctgcagctgtccctctcaaatgatgcacacaagagcaccaatgctcct
actgtgactctcttaggggcagaaaaatgcaccccttcaggaagaggacccagtgtacaa
caggacgggactagccctgtaatcgcaattcccctgggcgtgaaagagggcaacatccag
tggtcaagcaaagtagtccagttttctagtggcaaagaggtcaagaggatccagagtgca
gctccatctctccccagggtggaggtgatcctagactgttcggacagggagaaggaagca
cacaggtctctagctgaaagggggtgtgttgattctcaagaggaaggagggcagtcagaa
gcacctccttccctcctctcctttgcaatctcatcagaaggcacggagcagggagaagac
gaccagcactcggaaagggatcacagacctctcaagcacagggcaaggcacgcaaggctc
cggcgaagtgagagtctgtcagagaagcaggtcaaagaagccaaatctaaatgtaaaagt
attgcgttgctgctgacagcagctcccaatcccaattccaagggggtgttgatgttcaag
aagcgtcgtcaaagggcaaggaaatatactttagttagctacggtactggggagttagaa
cgtgacgaagacgagggtgaagaaggtgagggtgaagagggggacaaagaaaacactttt
gaagtgagtttgcttgcaacgagcgagtcagaaatagatgaagatttcttctctgacatt
gacaacgacggtaagattgtgacatttgactgggacagtggtctacctgaggttgaaaag
aaaacaaaaagtggagacgagatgcagacgcttccagaaagcacaggtaaaggggccctc
atgtttgccaagaggcggcagaggatggatcagattacagcagagcaagaggagatgaag
gcacgcacagtgcatacagaggaacgaagggaagccgtgtcagagaacttccagaaagta
agctcttcagtctatcaaacaaaagaggaagaaatatcaagacagcagacctgtgtgagc
aaaagctacacagacatgagccagaatcatagcaagactgtacagcaaaatggctttggc
ttagcaccagacacaaacctctcctttcagtcctctgtagctcaaaaagcagcaccattg
aataaaacagctaaacccttcccttctggggttcaaaaccgagcagctgcaccattttca
cccacaagaaatgtcactagtcctctttcagatataccagcaccacctccttactgctct
attagcccatcacctgaggctttatacagacctgtttcagctcctgcagccagcagagct
gccccaaatgtgtggtcattcactgagccaacagaacgcatagcatccagagatgaaagg
attgcggtgccagccaaaagaactgggatactgcaagaggcaaagagaagaagcacttca
aaacctatgttcactttcaaagaagcacccaaagtaagtcctaatcctgccctgttgtcc
cttgtacacaatgcagagggcaaaaaaggcactggagctggttttgagtcaggacctgaa
gaagactacctcagtttgggagcagaagcttgtaatttcatgcagactcaagcatctaaa
cagaaggcccctcctcctgttgctccaaagccttcactcaaggtctctcctactgctggt
actccggtttcaccagtttggtcacctccagctgcggcttctaataagcctccttctttc
ccagcaccagcctcacctcaggcagcatatcctgcaccactcaaatccccacagtatcct
cattctcctgcccatcctccaagtactctcaacctagctggtcctttcaaagggcctcag
gcaaccctagcgagtccaaaccacacacccaagacaacaccagtcacaccaagtgctgga
ggaacaaagccaccctttgagatgccaccagctatgagtgggaaaggagcacagttattt
gccagaaggcactctcgaatggagaagtatgtggtagattcagagactgtgcaggcaaac
atggcacgagcctcatctccaactccatctttaccagcttcttggaaatactcatctaac
gtccgagcacctccacctgttgcttataatcccatccactccccgtcttatcctcctgct
gctaccaagtcctcctctaagtccactgctgctaccaaaaacacaaaaagaaaacctaag
aaagttctcaatgctttggatattatgaaacatcaaccttatcaactcgatgcatcttta
tttacttttcaacctcctagtactaaggaaagccttgctattaagcagacatcgaaggtg
tacacttcaaagcaagctctacctttaagaccacctagcgctggctcccctactaatgcc
cgggcgtcttcagtgtactccgtgccagcctacagttcacaaccttcgttccagtcaaat
gcctctatcccagtaaatgaatcatattcacctacaggctactctgcattttctaagcca
gaaaccaccacatcctccttgtttactgctccgaggccaaaattttcagcaaagaaagct
ggcgtcactgcacaggaaagaagcagtggacgctcattatcacttcctgggagaccttct
tcattcatttctcgagccatgtctcctacttctccgcttatatttcagcctgcccctgat
tatttcagcaagccagacacaacagccgacaggcctggcaagagactgactccctgggaa
gcagcagcaagatcccctcttggcctagtggatgaagcttttgcgccccaaagcatgcag
gaatccattgctgctaatgtagtatcagcagctcgcaggaaaacacttcctgagccacca
gatgaatggaaacaaaaagtttcttatgagcctccagcccccagcagtagtgtagcctta
ttaggagggaagaaatcgggtattgtatcaccccccaaaagctccctgtctgccccaagt
gccaccacgcaggctggctctcagctgcagtatgcttactgcagtcaacgatccagaaca
gaccctgatataatgtccatggattccaggtctgactattgcttgtcaacagctgattcc
aactacaatccacagccaaggggatggaggcgtccaacatga
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