Phalacrocorax aristotelis (European shag): 142056632
Help
Entry
142056632 CDS
T11493
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03013
Nucleocytoplasmic transport
parx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142056632 (UPF3A)
03015 mRNA surveillance pathway
142056632 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142056632 (UPF3A)
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142056632 (UPF3A)
mRNA cycle factors
P-body specific factors
142056632 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
142056632
NCBI-ProteinID:
XP_074947904
LinkDB
All DBs
Position
1:67902236..67928682
Genome browser
AA seq
499 aa
AA seq
DB search
MRSEREAGPGLMRGGSGRDKWPMDIPQRRESPRRDPDAPPNPLPPPSSPPSPLPPPPPPL
HPAAGKQRDEKKTALSKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYS
RAYINFRNPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIE
DDPEYRKFLESYCADEEKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIR
EEKREERRRRELEKKRLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDE
LASEKHKEKGEEADTEENKWDKSPGSGSIKSKSLEASLKELKEKSQNDSDKEQRDLERRF
RDKEPERQRYRLDDGRKHRAHYEFDKFVRRNEEELKWGKGYNQDRGKKGNYNYSFTVEAV
DKLGKEDKCDDMASKKERIRNKDRPAMQLYQPGARTRTHTGSTSKTYDCSGKSFEDALDK
KYEADNSAGGGSEKSEEAE
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgcggtcggagcgggaggccgggccggggctgatgcggggcggcagcggccgcgacaag
tggcccatggatatcccgcagcgccgggagtcgccgcgtcgcgacccggacgctccgcca
aacccactgccgccaccatcttccccgccctccccgctgccgccgccgccgccgccgctt
cacccggcggcgggcaaacagcgagatgagaaaaaaacggctctgagcaaagtagttatt
cgacggcttcctccttgtcttactaaggagcaactggaggaacagctacatcctctacct
gcccatgattattttgagttttgcactgctgatcccagcctttatcctcatctctactca
agagcatacattaactttagaaatcctgaggacatccttctttttagagatcgctttgat
ggctatgtcttcattgataataaaggtttggagtatcctgcagtggttgaatttgctcca
ttccagaagatttcaaaaaagaagctgaagaagaaagatgccaaagctgggagcattgaa
gatgatccagaatataggaaatttttagagagttattgtgctgatgaagagaaaatctgt
gccaatcctgagattcttttgggagagattgaggccaaaacaagggaactcattgctaga
agaacaacaccccttttggaatatattaaaaatagaaaattagaaaagcagagaatacga
gaggagaaaagagaagaacggaggcggagagaattggagaagaaacgtctgcgggaggaa
gagaaaaggaagcgcagagaagaagaaagacgtaaaagaaaagaagtggagaagcaaaag
aagatttctgaaaaagaaataaggatcaagcttctcaagaagcctgaaaaaggagatgaa
ctggccagtgaaaagcacaaagaaaaaggtgaagaagctgacactgaagaaaacaaatgg
gataaatcacctggatctgggagtataaaatccaaatcattggaggcttcactgaaagaa
cttaaggaaaagtcacaaaatgatagtgacaaagagcaaagagatttggagagaagattt
cgagacaaagaacccgaaagacaaaggtatcgattggatgatggcagaaagcatagagct
cactatgagtttgacaagtttgtgagaaggaatgaagaagagctgaagtgggggaaagga
tacaaccaagacagaggaaagaaagggaactacaactacagcttcactgtggaggcagta
gacaaactgggtaaagaggacaagtgtgatgacatggcatccaaaaaggagcgcataaga
aataaggatcgcccagccatgcagttataccagccaggagctcgcactcgaacacatacg
ggatctacaagtaaaacctatgactgcagtgggaaatccttcgaagatgctcttgataag
aagtatgaggcagataattcagctggaggtggttctgagaagagcgaagaagcagaataa
DBGET
integrated database retrieval system
