Phalacrocorax aristotelis (European shag): 142057858
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Entry
142057858 CDS
T11493
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
parx Phalacrocorax aristotelis (European shag)
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
parx03000
]
142057858 (SOX6)
Transcription factors [BR:
parx03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
142057858 (SOX6)
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Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_WDHD1
HMG_box_2
Phage_holin_7_1
Motif
Other DBs
NCBI-GeneID:
142057858
NCBI-ProteinID:
XP_074950796
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All DBs
Position
5:56108195..56488042
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AA seq
817 aa
AA seq
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MPSNSEVLAGEVGESRTEEWKNSHYIRMSSKQATSPFACAADGEETMTQDLASRDKEEGN
SDQHATSHLPLHNVMHQKPHSEELPTLVTTIQQDPEWDGVISVQHRMESESNKLCSLYSF
RNTSTSPNKPDEGGRDRSELMTSVNFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSS
CMEKLLSKDWKEKMEKLNTSDLLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDE
QKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIP
IFPHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYA
AQLASMQVSPGAKMPSTPQPPNTTGALSPTGMKNEKRGTSPVTQVKDEAAQPLNLSARPK
TAEPVKSPTSPTQNLFPASKSSPVTVTNKSGIPSPLGGSLGRGSSLDILSSLNSPALFGD
QDTVMKAIQEARKMREQIQREQQQQQQPHGVDGKLPSMNNMGLNNCRNEKERTRFENLGP
QLTGKPNEDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDS
RGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYY
EEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQP
QIPITTGTGVVYPGAISMATTTPSPQMTSDCSSTSASPEPSIPVIQSTYGMKTDSGSLAG
NEMINGEDEIEMYEDYEDDPKSDYSSENEAHEAVSAN
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaactctgaagtgctggctggtgaggtaggagaaagcaggacagaagagtgg
aagaacagccactatataagaatgtcttccaagcaggctacctctccgtttgcatgtgca
gctgatggagaggaaacaatgacccaggacttagcatcacgagacaaggaagagggcaac
agtgatcagcatgcaacctctcatctgcctctacataatgtaatgcaccagaaacctcac
tctgaggagctaccaactctggtcacaacaattcaacaagatcctgagtgggatggagtc
atctcagtccaacacagaatggagtcagagagtaataagttatgttccctatattccttc
cgaaatacctctacctcaccaaacaagcccgacgaaggaggccgtgaccgcagtgagcta
atgaccagtgttaattttggaacgccagaacgccgcaaaggaagccttgcagatgtggtg
gatacactgaagcagaagaaactagaagaaatgaccaggactgagcaagaggattcatct
tgcatggaaaagctgctctctaaagattggaaggagaagatggaaaaattaaacacaagt
gatctccttggagaaattaaaggtacaccagaaagcctggcagaaaaagagcgacagctc
tctactatgatcacccagctgatcagcttacgggagcagctcctggctgcccatgatgaa
cagaaaaagctggcagcctcacaaattgaaaaacaacggcagcaaatggaccttgctcgc
caacagcaagaacagattgcaagacaacagcagcaacttctgcaacagcagcacaaaatc
aatctactgcagcagcaaattcagcaggttcagggtcacatgcctccgctcatgatccca
atttttccacacgaccagcggacactggcagcggctgctgcagcccagcagggattcctc
ttccccccaggaataacttacaagccaggtgataactaccctgtgcagttcattccatca
acaatggcagctgctgctgcttctggactcagccctttacagctccagcaactgtatgca
gctcagctggcaagcatgcaagtttctcctggagccaaaatgccatctactccacagcca
ccaaatacgacaggggcactctcacccactgggatgaaaaatgagaaaagagggaccagc
ccggtaacccaagttaaggatgaagcagcccagccactgaatctttcagcccgacccaaa
acagctgaacctgtcaaatccccaacatctccaacacagaacctcttcccagccagtaaa
agcagtccagtgacagtgacgaacaagagtggcatccccagcccgctcggtggatctctg
ggaagaggatcctctttagatatcctttccagtcttaattcacctgccctatttggggac
caggacacagtaatgaaagccattcaagaggctcgaaaaatgagagagcagatccaaagg
gagcagcagcagcaacagcagccgcatggtgttgatggaaaattgccctccatgaataac
atgggcctaaacaactgcagaaatgaaaaggaaagaaccaggtttgaaaatttaggccca
cagttaacaggaaaacccaatgaagatggaaaactgggccctggtgtcatcgatcttaca
aggccagaagatgcagaaggaagtaaagcaatgaatggctctgcagctaaactacagcag
tattattgttggccaacaggaggtgccactgtggctgaagctcgagtctaccgggattcg
cggggccgagccagtagtgaaccgcacatcaaacgaccaatgaatgctttcatggtttgg
gcaaaggatgaacgtcgaaaaattctccaagcgttccctgacatgcacaactccaacatt
agcaaaatcctaggatctcgctggaagtccatgtcaaatcaagagaaacaaccttattat
gaagagcaggcacggctaagtaaaatccacctagaaaagtatcctaattacaaatacaaa
cctcgaccaaaacgtacctgcattgttgacggaaagaaattgcgtattggtgaatacaaa
caactgatgaggtctcgaagacaggagatgaggcagttttttaccgtaggacaacagcct
caaattccaatcaccacaggaacgggggttgtctatcctggtgctatttccatggcgact
accacgccatcacctcagatgacatcagattgctcgagcacctctgccagccctgagccc
agcatccctgtcattcagagcacttatggtatgaagacggacagcggaagccttgctgga
aatgaaatgataaatggagaggatgaaatagaaatgtacgaggactatgaggatgatccc
aaatcagactatagtagtgaaaacgaagcccatgaggcagtgagtgccaactga
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