Phalacrocorax aristotelis (European shag): 142058860
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Entry
142058860 CDS
T11493
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142058860 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142058860 (SMG7)
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
142058860 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
142058860 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
142058860
NCBI-ProteinID:
XP_074952888
LinkDB
All DBs
Position
6:complement(30101452..30153733)
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AA seq
1192 aa
AA seq
DB search
MGLKSEIPLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTRWSVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHITVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGVLCKCPLQNDYQEDSGAAYP
LPAVKVSMDWLKLRPSVFQEAVVDERRYIWPWLISLLNSFQPHEEDLSSNNAVPLPEEFE
LQGFLALRPSFRNLDFSKGHQAITGDKEGQQRRIRQQRLIFTGKWIADNQPRLIQCENEV
GKLLFLTEIPELLLEDPSEAKESLALQETSIAEPLSTDGSPGLKSVLSSGRSLNNNCDAG
EKPMVTFKENIKPREINREQGRMYPPKDVGRERRDYSKGIVANKNDGKKDNNKRKNETKK
CVLDKMQEAGKQNVAVQVKSQTEMRKTPVSEARKTPVTQTPSQASSSQFIPIHHPGAFPP
LPSRPGFPPPTYVVPPPVAFSMSTGYTFPGGVSVPGTFLQPTAHSPAGNQVQGGKQSHIP
YSQQRPSGPGPMTQGPQQTPPPSQQTLSSLPAQATAQSASQLQVQALTQQQQQQSPTKAV
QGLGKSPPHHSGFQQYPQTDSSKQLWNPPQVQGSLGKIMPVKQSYYLQAQDPLKLFEQSL
QPPVMQQQPLEKKMKPFPMEPYNQNPSEVKVPEYYWDSSYGMADNRVMAQQSNMDRRGKR
QGVFRPEQDTVSRMTFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLAS
LPGRSLFKSLLEKPSELMSQSSSFLSLSGFSLNQERYPNNSMFNEVYGKNMNTSTKTEVT
PSVSHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFS
NFGPIGTPDNRDRRVADRWKTDKPAMGGFGLDYLPATSSSSESSWHQSSAPSGTWAAQGP
PAMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgggactcaaatcagagatacccttgaggcaggcagaagtcctgaaggctgacatgaca
gattcaaagctgggtccagcagaagtctggacttccagacaggctctacaggacttatat
cagaaaatgctagtgaccgatttggaatatgctttagataaaaaagtggagcaggacctt
tggaatcatgcctttaaaaatcagattacgacgctacagggtcaggcgaaaaatagagca
aatccaaatcggagcgaagttcaggcgaacctctctctgttcttagaggcagctagtggc
ttctacacacagttattacaggaattgtgcacagtttttaatgtagacttgccatgtcgt
gtaaagtcttcccagctgggaatcattagcaataaacagacgcacaccagcgccatcgtg
aagccgcagtctagctcctgctcttacatctgccagcactgccttgtccaccttggagat
attgctcgctataggaatcagaccagccaggcagagtcttactacagacatgcagctcag
cttgtcccttctaatggtcagccttataatcagttggctattctagcttcctccaaagga
gaccacttgaccacaattttctactactgcagaagcattgctgtgaagtttcctttccca
gctgcctccactaacctacaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aagactcgatggagtgtgtctgacttcatcaaggcatttattaaattccatggacatgtg
tatctgagtaagagcttggagaagctgagccctcttcgagaaaagctggaagaacagttc
aagaggttgttattccaaaaggccttcaattctcagcagttagtacatattactgttatc
aatctgtttcaactgcatcacctgcgagacttcagcaatgaaacagagcagcacagctac
agccaggatgagcagctctgctggacacagttactggctctcttcatgtcctttcttgga
gttctgtgcaagtgtcctttacaaaatgactaccaggaggactccggggctgcatatcct
cttccagctgtgaaggtttcaatggactggctgaaacttaggcccagtgttttccaggag
gcagtggttgatgaaagacggtacatatggccctggctgatttctcttctaaacagcttc
cagcctcatgaagaagatctatccagtaataatgcagtcccccttccagaagagtttgag
ttgcaaggattcttggctctgaggccctcattcaggaacttggatttttccaaaggccac
caggcaattacaggagataaggaagggcaacaacgtcggatacggcaacagcgtctgatc
ttcacaggcaaatggatagctgataaccagccaaggttgattcagtgtgaaaatgaggta
ggaaaactgttgtttttgacggaaatcccagaattattactagaggaccctagtgaagcc
aaagagagtctcgccttgcaggaaacatctattgcagagccgctatctacagatgggagc
cctggactcaaatcagttctgtcctctggcagaagcctgaacaacaactgtgatgcagga
gaaaaaccgatggtcacgttcaaagagaacatcaagccacgggaaattaacagagagcaa
gggcgaatgtatccccctaaagatgtaggtagggaaagacgggactatagtaaaggaata
gtagccaataagaatgatggaaagaaggacaacaataaaagaaagaatgagaccaagaaa
tgcgtcttggataagatgcaggaagcaggaaagcagaacgtggcagttcaggtgaaatcc
cagacagagatgaggaagactccagtgtctgaagccaggaaaacacctgtaactcagact
ccaagtcaggccagcagttctcagttcatccccattcatcacccaggagccttccctccc
cttcctagccggccagggtttccacctccaacctacgttgtccctcctcctgtggctttc
tccatgagcacggggtacaccttcccaggtggtgtttctgtcccaggaacgttcctacag
cccacagctcactcacctgcaggaaaccaggtgcaaggtgggaaacagtcccacattcct
tacagccagcaacggccctctggaccagggccaatgacccagggacctcagcaaacacca
cctccttcccagcaaaccctttcatctttaccagctcaggcaacagcacagtccgcaagc
cagttacaggtccaagctctgacccagcaacagcagcaacagtcccctacaaaagctgtg
cagggcctggggaagagcccgccacatcactctggattccagcagtatccgcagacagac
tcatcaaagcagctctggaacccgcctcaagtccaaggctcactagggaagatcatgcct
gtaaagcagtcctattacctgcaggcccaggaccctctaaaattatttgaacagtcatta
cagcctcctgtgatgcaacagcaacctctggagaaaaaaatgaagcctttcccgatggag
ccatataaccagaacccctcagaagtcaaggtgccagaatattactgggactcttcctat
ggcatggctgacaatagggtgatggcacagcagtctaacatggaccgcaggggaaaacgg
caaggagtcttccgcccagagcaggatactgtctccaggatgacctttgaggaccccaag
agctcccctctgcttcctccggacctgttaaagagtctggctgccttggaggaggaggaa
gagctgattttctctaatcctcctgatctttacccagctctgctggggcctctcgcctct
cttcctggacgaagcctctttaagtccctgctggaaaaaccatcagaattgatgtctcag
tcgtcatctttcctgtccctcagtggcttttctcttaatcaggaaagatatccaaacaac
agcatgttcaatgaggtatatgggaaaaacatgaataccagcacaaagacagaagtcacc
ccttcagtttcccatcaggagacttcactgtattctctctttgaagggactccgtggtct
ccatcccttccagccagctcagatcattcgacaccagccagccagtctcctcactcctcc
aaccccagcagcttgccaagctcccctccaacccataaccacaattctgttcccttctcc
aacttcggacctattgggactccggacaacagagacaggagagttgcagaccgctggaaa
acagataagccagcaatgggagggtttggtctggactatctcccggcaacatcgtcatct
tcggagagcagctggcaccagtctagtgctcccagtggcacctgggcagcccaaggtcct
cctgctatggaggactcctcagctgtgcttatggagagcctgaagtccatctggtccagt
tccatgatgcaccctggaccctcagccctggagcagctgttaatgcagcagaagcagaag
cagcaacgtggacaaggcaccatgaacccgccgcattga
DBGET
integrated database retrieval system
