Phalacrocorax aristotelis (European shag): 142058870
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Entry
142058870 CDS
T11493
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
parx Phalacrocorax aristotelis (European shag)
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
parx03000
]
142058870 (RC3H1)
04121 Ubiquitin system [BR:
parx04121
]
142058870 (RC3H1)
Transcription factors [BR:
parx03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
142058870 (RC3H1)
Ubiquitin system [BR:
parx04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
142058870 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Baculo_IE-1
Vesi_VP2
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
142058870
NCBI-ProteinID:
XP_074952912
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All DBs
Position
6:complement(30491629..30576370)
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AA seq
1115 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSSYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPTRAPADLSSVSVTKQLQMVPRGSQLYNTQQADMFCPDPRGA
APPFEPAPYQQGVYYPTQSMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSPQYTQPQQY
PPMGQPIYPPHYDSRRIYPPVQPYQREDIVRGSPVPIEIPQAAVPSYVPESRDRYQQTEG
YCPVAPHLSQIRPSCHRPHPSLDELHRRRKEIMAQLEGRKVISPPPFAPSPTLPHPFHSE
EYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANVDSKAMR
DQQLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQGATTKSI
ISDYNPYGTHSGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAEREQQLRME
LQQVDHQISQQTQMRGLEREATTLAGQPQPPPPPPKWPGMISSEQLSLELHRVEREIGKR
TRELSMEGQSSLDIKTKLGTTKQAENGQLEPQSKVPAEDLALTFSSDVPNGSALTQENIG
LLSNKTASLSLSEDPEGGGDNHDSQRAGATPTSAP
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
tttgatgaaacaatccggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgcccttttgaccagaccactatcaatacagac
attgaactccttcctgtgaactcagccttgctgcaactagtgggtgctcaggttcctgag
cagcagccgattactttatgtagtggagctgaagataccaagcattatgaggagggcaag
aaatgcgtggaagaattagcattgtacctcaaaccactcagcagtgcgagaggtgtgggt
cttaacagtactactcagagtgtgctaagtcgtcccatgcaaaggaaacttgtgacatta
gttcattgccagctagtggaggaagaagggcggatcagagccatgcgtgcagcacggtcg
ctgggtgaaagaacagtcacagagctcattcttcagcaccaaaatcctcagcagctctct
tctaacctctgggctgcagtgagagccagagggtgccagttccttggaccagcaatgcaa
gaggaggctttaaagctggttctactggctctggaagatggatctgctttgtcacgaaag
gtcttggttctctttgtggttcagaggctggagccacgatttcctcaggcttctaaaact
agcattgggcatgttgtccagcttctttacagagcctcgtgcttcaaggtgacaaagcga
gatgaggattcttccctgatgcagctgaaggaggaatttcggacgtacgaagctctgaga
agggaacatgattcccagatagttcaaattgctatggaagcaggtttacgcattgcgcca
gatcagtggtcttcactgttatacggagaccagtctcataaatcccacatgcagtctatt
attgacaagttgcagacaccagcctcgtttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcacctcgagctcctg
gcgaatattgatcccagtccagatgctccacctccgacatgggaacagctggaaaatgga
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaag
aaaggaacagatcagcaacagcctcctcagcacagcaagtacaagacatacatgtgccga
gacatgaaacagagaggaggatgcccccgaggggccagctgcacctttgcacattcacag
gaggagctagaaaaattccgtaaaatgaacaagcgcctggttcccagaagacccctgagt
gcctccctgggccagctaaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacggtgacgcaacttatttctcgagggactgactccagttatgaaactgctctg
aagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgtccccaagagctccatttctgccttaccagtgaaccctcaccctgtgcccact
agagcaccagcagatctgtcttcagtgtctgtcactaagcagttgcaaatggtaccacga
gggtctcagttgtataatactcagcaagcagatatgttttgtccagatcctagaggagct
gccccaccatttgagccagcaccctaccaacaaggagtttactatcccactcagtccatg
tctcgctttgtccgacctcctccatcagctcctgaacctggtccgccttatttagaccat
tatccaccctaccttcaggatcgtgtggtgagcccacagtacacgcagccacagcagtat
cctcctatgggacaacccatatacccaccgcactacgatagccgtcgcatatatccccct
gtccagccttatcagcgagaggatattgtccgaggaagccctgtacccattgaaattccg
caagcagctgtaccttcctacgtacctgaatccagagacagataccagcaaacagagggt
tattgcccagtggctccgcatctcagtcagatcagaccttcgtgccacaggcctcatccc
agcctggacgaacttcaccgacgacggaaagagatcatggcccagctagaagggaggaag
gtgatttctccacctccttttgcaccatcaccaaccttgcctcacccttttcattcagag
gagtacttggatgaagacctgaaggtagctgggaaatacaaaggaaatgactatagccag
tactctccctggtcctgtgataccatcggctcctacattggaaccaaagatgcaaaaccc
aaagatgttgtggcagcaaggagtgtggagatggcgaacgtagatagtaaagccatgcgt
gaccagcaattagacatgcaacgaagagcagcagagactggtgatgatgacctcattcca
tttggagaccgaccaactgtgtcgagatttggggctatctctcgtacttccaaagcgatg
taccagaattctggtcccatgcaggccatggcagttcagggagctaccaccaaatcaatc
atttcagactacaatccttatggaactcacagtggctggggaggttctccatattctcct
catcaaaatataccttctcagggacgtttcaatgacagggagagactgtccatgtcagat
gtggctggtcatgggaaacagttgccttcagcggagcgagagcagcagctgcgcatggag
ctgcagcaagtagaccatcaaattagccagcagacacaaatgcgaggactagagagggag
gcgactaccctggcaggccaaccacagcccccacccccacctcccaagtggcctgggatg
atctcaagtgaacagctgagcttggagctacaccgggtggaaagggaaattgggaagaga
acccgtgagctgagcatggagggccagtcttcactggatataaaaaccaaactgggtacc
actaagcaggcagaaaatggacaattagaaccgcaaagcaaggttccagctgaggacctc
gcactgacattcagcagtgatgttccaaatggatcggccctgacacaagagaacattggc
cttctgtcaaacaagacggcatctctcagcctgtcagaggacccagagggaggaggagac
aaccacgactcccagagagcaggagctacgcccacatctgctccatga
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