Phalacrocorax aristotelis (European shag): 142058881
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Entry
142058881 CDS
T11493
Symbol
TNR
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04510
Focal adhesion
parx04512
ECM-receptor interaction
parx04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142058881 (TNR)
04518 Integrin signaling
142058881 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142058881 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
parx00536
]
142058881 (TNR)
Glycosaminoglycan binding proteins [BR:
parx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142058881 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
Fn3_Dep-1_2nd
FN3_Tor_3rd
EGF_2
DUF7949
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
142058881
NCBI-ProteinID:
XP_074952937
LinkDB
All DBs
Position
6:complement(30930634..30964932)
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AA seq
1355 aa
AA seq
DB search
MGTDSENPVLRNVLISFNLLLLGAVLKPFECRLEVPTEPAERPAVDEESGPANCSPPIKE
QPIVFHHIYNINIPLDSCCSSMFKSSAEEVSSEDDRLAEYAEQTSDSESQVTFTHRINLP
KQACKCSTSLPSLQELLSRIEILEREVSMLRDQCNSNCCQENAATGQLDYTPQCSGHGNF
SLESCSCVCMEGWAGSNCSEPRCPRGCSSRGVCLEGQCICDNDYGGEDCSQLRCPAGCGS
RGLCVDGECVCEEGFIGEDCSQLRCPHDCSGKGHCANGTCICHEGYTGEDCGWLHCPNAC
SGRGVCQDGLCVCEEGYEGQDCSAVASPENLRVMEVSDSSIELAWDSPGAVTEYVISYQP
AGPGGTQLQQRVPGDSSSITITELEPGVAYNISIYAVISNVLSIPVTSKVMTNLATPQGL
KFKTITETTAEVQWEPFSFPFDGWEISFIPKNNEGGMIAQLPSTVTTFNQTGLKPGEEYT
VTVVALKEQARSPPTSNSISTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDTILLKYGLA
DGEGGRTTFRLQPPLSQYSLQALRPGARYRLTVSALRGANESRPALAQFTTEIDAPKNLR
VGSRTPASLELAWDNSEAEAHSYRVVYSTLAGEHYHEVLVPRDTGPTTRATLTDLVPGTE
YGIGISAVMGSQQSVPATMNARTELDSPRDLLVTASTETSISLTWTKATGPIDHYRVTFT
PASGMASEVTVPWDKSQLTLSELEPGTEYTISIIAERGRQQSLEATVDAFTGARPITQLH
FSQLTSSSVNVTWSDPSPPADRLILTYSPRDEEEAQQLTLDGTCRHASLMGLQPSTEYLV
SLVAIHGAISSEPVVGSITTGIDAPKDLRVGNVTQESMTVYWSPPIAAFDHYRISYRAAE
GRTDSTAITSDATEYALRRLQPATKYEIGVKSVRGREESEVASITVHTAMDVPLGVTATN
VTPTEALLQWNPPLSEVESYVLVLTRRAAARETILVDGVNQEYQLTNLLPSTTYTVSMYA
TNGPLTSQTISTNFTTLLDPPTNLTASEVTRRSALLSWVPPVGEMENYIMIYRSSDGSRK
ELIVDAEDTWIRLEGLSETTEYTVSLQAAQNAMRSGFISTTFTTGGRVFANPQDCAQHLM
NGDTLSGIYTISINGDLSQRVQVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRVGFGN
LEDEFWLGLDNIHKITSQGRYELRIDMRDGQEAAYAYYDKFSISDSRSLYKLRIGDYNGT
SGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGINW
YHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggggactgacagtgaaaacccagtcctgaggaatgtgctcatcagcttcaacctgctc
ctgctgggtgccgtccttaaacctttcgagtgccggctggaggtaccaacagagccagct
gagaggccggcagtggatgaggaaagtggccccgccaactgcagcccacccatcaaagag
cagcccattgtcttccaccacatctacaacatcaacatccccctggacagctgctgctcg
tcaatgttcaagtcttcagctgaggaggtgagttcagaagacgaccggctggcggagtat
gcggagcagacctctgacagcgaaagccaggtcaccttcacccacaggataaacttgccc
aagcaggcctgcaagtgctccacctccctcccgtccctgcaggagctgctgagcaggatt
gagatactggagagggaggtctccatgctccgggaccaatgcaactccaattgctgccaa
gaaaatgcagccacagggcagctggattacaccccgcagtgcagcggccacgggaacttc
agcctggagtcatgcagctgtgtgtgcatggagggctgggcaggcagcaactgctccgag
ccccgctgcccccggggctgctccagccgtggagtctgcctggaaggccaatgcatctgc
gacaatgactacgggggtgaggactgctcgcagctccgctgccctgctggctgcggctcc
cgtgggctctgcgtggacggtgaatgtgtctgtgaggagggtttcatcggggaggattgc
tcccagctgcggtgcccccacgactgctcagggaagggccactgcgccaacggcacatgc
atctgccatgagggctacaccggcgaggactgcgggtggctgcactgccccaatgcctgc
agcggtcgtggggtctgccaggacggtctctgtgtctgcgaggaaggctacgaagggcag
gactgctcggcagtggcttctcccgaaaacctgcgagtgatggaagtcagcgacagctcc
atcgagctggcatgggacagccctggggcagtcactgagtacgtcatctcataccagcca
gcggggccagggggcacccagctccagcagcgggtgcccggggacagtagcagcatcacc
atcacagagctggagccaggtgttgcctacaacatcagcatctacgcggtcatcagcaat
gtcttgagcatccctgttacctccaaggtgatgaccaaccttgccacgccacaggggctg
aagttcaagaccatcacagagacgacggcagaggtgcagtgggagcccttctctttcccc
tttgacggctgggagatcagcttcattcccaagaacaatgagggcggcatgattgcccag
ctccccagcaccgtcaccaccttcaaccagacagggctgaagccaggtgaagagtacacc
gtcactgtggtggccctcaaggaacaagccaggagccctcccacctccaacagcatctca
accctcatcgacggcccaacgcagatcctggtgcgggatgtctccgacacagtggccttt
gtggagtggacaccaccccgcgccaaggtggacaccatcctgctgaagtacgggctggcg
gatggggagggggggaggaccaccttccgcctgcagcctcccctcagccagtactccctg
caggccctgcggcccggcgcccgctaccgcctcaccgtcagcgccctccggggtgccaac
gagagccggccagccctcgcccagttcaccacagagatagatgcccccaagaacctgcgg
gtgggctcacggacgcctgccagccttgagcttgcctgggacaacagcgaggctgaggca
cacagctacagggtggtctacagcaccctggccggggagcactaccatgaagtcctggtg
ccgcgggacactggtcccaccacccgggccaccctcacagatcttgtgccggggacagag
tacggcatcgggatttcagccgtgatgggcagccagcagagtgtgccggcaaccatgaat
gccagaactgagcttgacagcccccgggacctcctggtgacagcctccacagagacttcc
atctcactgacctggaccaaagccacaggtcccattgaccactaccgtgtcaccttcacc
cctgcctcggggatggcctccgaagtgacggtgccctgggacaagtcgcagctcaccctc
tcggagctggagccagggacagagtacaccatctccatcatcgcagaaaggggacgccag
cagagcctggaggccactgtggatgcattcacaggggcccggcccatcacgcagctccac
ttctcccagctgacatcctccagtgtgaatgtcacgtggagtgatccatccccaccagca
gaccgcctcatcctcacctacagcccccgggatgaggaggaggcacagcagctcacgctt
gacggcacctgcaggcatgccagcctgatgggcttgcagccatccaccgagtatctggtg
tcactggtggccatacatggtgccatcagctccgagcctgttgtgggctccatcacgaca
gggattgatgcaccgaaggacctcagggtgggaaatgtcacccaggagtccatgactgtc
tactggagccctcccatcgctgcctttgaccactatagaatttcgtaccgtgccgctgaa
gggaggacagacagcactgccatcaccagtgatgccactgagtatgccctccgccgcctg
cagcccgccaccaaatatgagatcggcgtgaagagtgtgcggggccgggaggagagtgag
gtggcttccatcactgtgcacacagccatggatgtccccttgggggtcacagccaccaac
gtcacccccaccgaggcgctgctgcagtggaacccaccactgtcagaggtggagagctat
gtcctcgtcctcacacgccgtgcagctgcaagagaaacaattcttgtggatggagtcaac
caggagtaccagctgaccaacctcctgcccagtaccacctacacagtctctatgtatgcc
accaatgggcctctcaccagccagaccatcagcaccaactttacaactcttttggatcct
ccaacaaatctgactgcgagtgaagtcactcgacggagtgccttgctctcctgggtgcct
cctgtgggagagatggagaactacatcatgatctacagatcttccgatggcagccggaag
gagctgattgtggatgctgaggacacgtggatccgcttggaggggctttctgagaccaca
gagtacaccgtgagcctgcaagctgcccaaaatgccatgcggagtggcttcatctccacc
accttcaccacaggcggccgtgtctttgctaaccctcaggactgtgcccagcacctgatg
aatggagacacgctgagcggcatctacaccatctccatcaatggggacctcagccagcga
gtgcaggtgtactgtgacatgaccactgacggaggcggatggattgtcttccagaggcgg
cagaacgggctgactgatttcttccggaagtgggcagactaccgggtgggctttggaaac
ttggaggatgagttttggctgggcttggacaacatccacaagatcacgtcccaggggcgc
tatgagttgcgaatagacatgagggacggccaggaagcagcatatgcctactatgacaag
ttctccatcagcgactcccgcagcctgtataagctgcgaattggggactacaatggcact
tcaggggactccctcacctatcaccagggccgccccttctccaccaaggacagggacaat
gatgttgctgtgaccaactgcgccatgtcctacaaaggggcctggtggtataagaattgc
caccgcaccaacctcaatggcaagtacggagagtcccggcacagtcaggggattaactgg
taccattggaaaggccacgagttctccatcccctttgtggaaatgaagatgcgaccatac
aaccaccgtaacatctctgggaggaagagacggtccctacagctctga
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