Phalacrocorax aristotelis (European shag): 142059232
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Entry
142059232 CDS
T11493
Symbol
PTCH2
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 2
KO
K11101
patched 2
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
142059232 (PTCH2)
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
142059232
NCBI-ProteinID:
XP_074953897
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All DBs
Position
6:50415004..50436823
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AA seq
1431 aa
AA seq
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MGAAAAAAANGSGGGGAAPAPPAPXLPFRGAAGGRRHTALRTGTATEHRPRPRRAYGGRR
ARPHITGVPSPASRPAMPDEPRRSAPPLRAARRKPLPEGRAVGQRAPLWLRARFQALLFA
LGCRIQRHCGKVLFVGLLVFGALAVGLRVASIETDIEHLWVEAGSRVSQELSYTKEKLGE
ESVYTSQMLIQTPKRDGENILTQEALQLHLEAALAASKVQVSLYGKSWDLNKICYKSGVP
IIENGMIERMIEKLFPCVILTPLDCFWEGSKLQGGSAYLPGRPDIQWSNLDPLQLMEELG
QFTSLEGFKELLDKAEVGQAYMERPCLDPRDPQCPPSAPNKQSQQSPDIPAELSGGCHGF
SRKFMRWQEELILGGTTKDSQGKLLRAEALQTMFLLMSPRQLFEHFKDDYEIHDISWSEE
KAGAILEAWQRKFVELAQDSIPPNATQSVHAFSTTTLNDIMKSFSDVSAIRVAGGYLLML
AYACITMLRWDCSKSQGAVGLAGVLLVALSVASGLGLCSLLGISFNAATTQVLPFLALGI
GVDDMFLLAHAFTEMSQHIPFKERTGECLKRTGTSVALTSVSNMIAFFMAALVPIPALRA
FSLQAAVVVVFNFAMVLFVFPAILSLDLHRREKRRLDILCCFYSPCSSRVIQIQPQELAD
ANDNHACHPSPYGHPGVATSTQITTTVQAFTRCDPSGHHVVTVLPPTSQVCTSPAVLLPP
TDPLGSQVFAPSSSTRDLLAQLDEAKSGRECVPLPFCRWSLADFARDKYAPLLLRTRTKV
VVAVLFLALLGLSLYGTTMVHDGLYLTDIVPRDTKAHAFISAQFKYFSFYNMFIVTKGGF
HYPGAQAALLSLHQAFSTVKYVVREGNRDLPKMWLHYFQDWLRGLQATFDRDWQAGRITH
DSYRNGSEDGALAYKLLIQTGNKKEPFNFNQLTTRRLVDENGIIPPDTFYICLTVWASND
PLGFAASQANFYPPPPEWIHDKYDTTGENLRIPAAQPLEFAQFPFYLSGLRRTADFVEAI
ESVRAICREAAQRHGVLSYPSGYPFLFWEQYIGLRHWFLLAISILLACTFLVCALLLLNP
WTAGIIVSILAMMAVELFGIMGLMGIKLSAIPVVILIASVGIGVEFTVHVALGFLTAAGS
RNVRSAAALEHTFAPVMDGAVSTLLGVLMLAGSEFDFIMRYFFAVLTILTLLGLLNGLVL
LPVLLSVIGPPPEASPVDNGPRLPPPEPVPPCLGPGGLYVRRAPAWPATFPDPSDTECYM
EGVGPGSPRGPFIVPPAPAHILLEAGKDPSFPRITVLKPYKDSPEVQGKEAPGPQPAPPL
PFGEPCPAPPRDYPQPCPPGTRPAPAAALPAYSTHLQGPAGSYATVTATASVTVALHPTL
PGSYPNFGPEGFAGGEQDCLEEPSVPSTGGTAMPDAFEMQSMGRHGAGSRR
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctgccgcggcggcggcggccaatgggagcggcggcggcggcgcggccccggcg
ccccccgcccgcctcccctttagaggcgcggcgggcggccggcggcacacagccctccgc
accggcaccgccaccgaacaccggccccggccccgccgcgcgtatgggggccgccgcgct
cggccccacataacgggggtgcccagccccgccagccgccccgccatgccggacgagccc
cgccgctccgcgccgccgctccgcgccgcccgccgcaagccgctgcctgagggcagggcc
gtgggccaaagggcccctctgtggctgcgggcccgctttcaggcgctgctcttcgccctg
ggctgccggatccagcggcactgcgggaaggtgctcttcgtggggctgctggtgttcggg
gcgctggccgtggggctgcgggtggcctccatcgagaccgacatcgagcacctctgggtg
gaagcgggcagccgggtgagccaggagctgagctacaccaaggagaagctgggcgaggag
tctgtctacacgtcccaaatgttgatccagaccccgaagcgggatggggagaacatcctg
acgcaggaggccctgcagctccacctcgaggcggccctggctgccagcaaagtccaagtc
tcactgtatggaaaatcgtgggatttgaataagatctgctacaagtcgggtgtccccatc
attgagaatggcatgatcgagaggatgatagagaagctgttcccctgtgtgatcctgaca
ccgctggactgcttctgggaaggctccaagctgcagggaggctcagcctacctcccgggc
cgcccggatatccagtggagcaacctggaccctctgcagctgatggaggagctggggcag
tttacatccctggaaggctttaaagagctgctggataaggcagaggtggggcaggcttac
atggagcggccctgcctggacccccgggacccgcagtgcccccccagcgcccccaacaaa
caaagccagcagagccccgacatcccagccgagctctcaggaggctgccatggattctcc
aggaagttcatgcgctggcaggaggagctgattttaggtggcacgaccaaagactcccag
ggcaagctgctacgcgccgaggccctgcagaccatgttcctcctcatgagcccccggcag
ctctttgagcacttcaaggatgactacgagatccatgacatcagctggagtgaggagaag
gcgggtgccatcctggaggcctggcagaggaaattcgtggagctggcacaggactccatc
ccgcccaacgccacgcagagcgtccatgctttctccaccaccacgctcaatgacatcatg
aagtccttctctgacgtcagtgccatccgggtggccgggggctaccttctcatgctggcc
tatgcctgcatcaccatgctgcggtgggactgctccaagtcccaaggggccgtgggcctg
gccggggtcctgcttgtggctctctccgtggcctctggcctggggctttgctcactgctg
ggcatctccttcaacgctgccaccacgcaggtcctgcccttcctggccctcggcattggt
gtggacgacatgttcctcttggctcacgccttcactgagatgagccagcacatccccttc
aaggagcggacgggcgagtgcctgaagcgcacagggaccagcgtggctctcacctctgtc
agcaacatgatcgccttcttcatggcagccctggtccccatccctgccctgcgtgccttc
tccctccaggctgcggtggttgtggtgttcaactttgccatggtgctattcgtcttccct
gccatcctgagcctggacctgcaccgccgtgagaaacgccggctcgacatcctctgctgc
ttctacagcccttgctcctcgcgggtcatccagatccaaccccaggagcttgcagatgcc
aatgacaaccacgcctgccacccctccccttacgggcaccccggtgtggccaccagtacc
cagatcaccaccaccgtgcaagccttcacccggtgcgacccctcgggccaccatgtcgtc
accgtcctgccgcccacctcccaggtgtgcacctcacccgctgtcctcctgccccccact
gaccccctgggctcgcaggtcttcgccccgtccagctccacccgggacctgctggcccag
ctggatgaggccaagagcgggcgggagtgcgtccccctgcccttctgccgatggagcctc
gccgactttgcccgggacaagtacgccccactcctcctgcggacccggaccaaggtggtg
gtggcggtgttgttcctggcgctgctgggcctgagcctctatggcaccaccatggtgcat
gacgggctctacctgacggacatcgtgccacgggacaccaaggcgcatgccttcatctcg
gcccagttcaagtacttctccttctacaacatgttcatcgtcaccaagggtggcttccac
tacccaggtgcccaagccgcactgctcagcctgcaccaggccttcagcacagtcaagtac
gtggtgcgggagggcaaccgcgacctgcccaagatgtggctccactacttccaggactgg
ctgcgagggctccaggccacctttgacagggactggcaagccgggcggatcacccatgac
agctaccgcaacggctccgaggacggggcgctggcgtacaagctcctaatccagactggt
aacaagaaggagcccttcaacttcaatcagctgaccacgcggcggctggtggatgagaat
ggcatcatcccccctgacacgttttacatctgcctgacggtgtgggccagcaacgacccc
ctgggcttcgctgcctcccaggccaacttctaccccccgccacccgagtggatccatgac
aagtatgacaccacgggcgagaacctgcgaatcccagcagcccagccgctggagttcgcc
cagttccccttctacctgagtgggctgcgtcgcacagctgacttcgtggaggcaattgag
agcgtgcgagccatctgccgggaggctgcccagcgccatggcgtgctgagctaccccagc
ggctaccccttcctcttctgggagcagtacattggcctgcgccactggttccttctggcc
atcagcatcctgctggcctgcaccttcctcgtctgcgccctgctgctgctcaacccctgg
acggccggcatcatcgtctccatcctggccatgatggcagtggagctgtttggcatcatg
gggctgatgggcatcaagctgagtgccatccccgtggtcatcctcatcgcctcagtgggc
atcggtgtggagttcaccgtccacgtggccctgggcttcctgacagctgcggggagcagg
aatgtgcgctcggccgcagcgctggagcacacctttgccccggtgatggacggtgccgtc
tccaccctcctgggggtcctcatgttggcgggctccgagtttgacttcatcatgaggtac
ttctttgcagtgctcaccatcctgacactgctggggctcctcaacgggctggtgctgctg
cccgtcctgctctctgtcatcgggccaccacctgaggcatccccggtggataatggaccc
cgcctgccccctccagagccggtgcccccatgcctgggccctggtgggctgtatgtccgg
cgtgccccagcctggcctgccaccttccctgacccctcagacacggagtgctacatggag
ggtgtggggccaggaagcccgcggggacccttcattgtgccccctgccccagcacacatt
ctgctagaggccggcaaggaccccagcttcccccgcatcactgtgctgaagccctacaag
gacagcccggaggtccagggaaaggaggctcccggcccacagcctgcaccccccctgcct
tttggggagccatgccccgcgccgcctcgagactacccacagccctgcccaccaggcacc
cggccagctcctgctgcagccctgcccgcatacagcacccacctgcagggtcctgctggc
agctatgccaccgtgacggccaccgcttcagtgacggtggccctgcaccccacgctgcct
gggtcctaccccaactttggcccagaaggcttcgccggtggcgagcaggactgcctggag
gagcccagtgtgcccagcaccggtggcactgccatgcccgatgcctttgagatgcagagc
atgggacgccacggggcaggcagccggcgctag
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