Phalacrocorax aristotelis (European shag): 142060001
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Entry
142060001 CDS
T11493
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
142060001 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
parx04131
]
142060001 (VPS8)
Membrane trafficking [BR:
parx04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
142060001 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
TPR_VPS8_2
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
Beta-prop_WDR5
zf-RING_UBOX
Beta-prop_WDR3_1st
WDR55
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
142060001
NCBI-ProteinID:
XP_074955585
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All DBs
Position
7:28340388..28434548
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AA seq
1459 aa
AA seq
DB search
MAAQSALSLHPSSSAGRRGPLKAGTGAGRACAGHGASPDAGSSPGGAGLVRWRTSRSLAM
EAAAEQGACPAGAEAEPGPEPPAHRLSAAELDRELDSRSELIDDKEFDIPQVDTPPTLES
ILNETDDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKIPDSLSLHG
SVIRLSLLKGISAQIASAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQALRLCLGS
TAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKF
TDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVELRDHPI
TQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAFC
RGDVVHFLLVKRDDTGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQ
EELETIEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSINSCGGQIFYLGTKSV
HVITLRSWRERVDHLLKQERLTDALTLAWSFYEGKAKAVVGLSGDTSKRKAVIADRMVEI
ILHYADRTLKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRTDLLFNQIYDKMSENSVAK
GIFLECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVLL
CWENRLYDAMIYVYNSGMNDFISPMEKLFKVIVPPLNAGKSLTDEQVVMGNKLLVYISCC
LAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEGSVDEEVYPHVRTLLHFDTREFLNVL
ALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVN
RTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFM
YERQLRYDKIIGCYLRDPVRKEEVFNYIHNILSMPGYSVEEKQSVWQKALEHIEELLLLS
PCKAADLVAIHFSEQIESIITNLQDQFLLFQFLRSLLDPREGINQDLIHLPPCITEQFVE
LLCQYSPDQVLETLKVLEYCRLEETIQITQKHQLQEASSYLLEKKGDIHGAFLVMLERLQ
SKLLMLTQDDEKNLGSAGLPLLENIEDTLMKTIALCRRNSHNLDQQQREALWFPLLEAMM
SPQKLSGSSQCQYSESLKSLTMQVLNNMAAFIALPLILQRILQDPVYGKGKLGEIQGLVL
GMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETA
DEIIVFSCGHLYHSLCLVSKECGTVTKGLMRWMCYKCNSSNKGGKLSENISELKKGIGAS
LAQTSSESVLDPQQIQAFDQLCRLNRGTSRLALLTELSRGHGGEKHGLLSISHSDLATSS
VFQNENFQLHLVPPPLAED
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacagtcggctctgtccctccatccctccagcagcgcggggcgccgcggcccc
cttaaggccggcacgggggcgggccgcgcctgcgcagggcatggggcgtctccagacgcg
ggttcgagtcctggcggcgccggcctggtgcggtggcggacgtcccgcagcctggccatg
gaggcggcggcggagcagggtgcctgccccgcgggagcagaggccgagccgggcccggag
ccacccgcgcaccggctgagcgcggcggagctggaccgcgagctggactcccgcagcgag
ctgatcgatgacaaagagtttgacattcctcaagttgatacccctccaacactggagagc
atcttaaatgagactgatgatgaagaagagtctttcattttggaggatccctttctcttg
aacattgataacacggatacacactcctatgacacatcttctgtagcaagctctgatagt
ggggaccggacacacctgaaaaggaagaaaaaaatcccagattctctgtcactccatgga
tcagttatacggctctcacttctgaaaggaatttctgcccaaatagcgtctgcagcagac
aaagtggatgctggcttgcccactgcaatcgcagcatcgaatctgatagcagtggggact
tcccatggattagcactgatatttgatcaaaaccaggctcttcggctgtgtctgggcagc
actgctgttggggcccagtatggggctatctctgctctcagtatcaacaatgactgttcg
aggctcctctgtggctttgcgaaaggacagatcacaatgtgggatctggccagtgggaag
ctgctacgatcaataacagacgcccacccaccaggaacagccattttgcacatcaagttt
acagatgatccaacgcttgccatttgcaatgacagcggaggctccgtatttgaactgtca
tttaagagggttatgggagtaagaacgtgtgaatctcgatgtctcttcagtggctcaaag
ggggaagtttgctgtattgaaccattacatgcaaaagttgagctgagagaccatcctatc
acccagtattcactgctggccatggcttccctaacaaagatactggttattggcctgaag
ccatctctgaaagtgtggatgacctttccctatggtcgtatggacccttctagtgtccct
cttctggcgtggcactttgtggctgtacagaactctgtgaaccccatgcttgcattttgt
cgaggagatgtcgttcattttcttctggtaaagagagatgatactggtgccatacatgtc
actaagcagaggcagcttcatctacactatgacctcatcaactttacttggataaactca
cggacagcagtgctcctggacagtgtggagaagctgcatgttatagatcgtcagacacag
gaggagctggagaccatagagatctcagaagttcagctagtctataacagcagccacttc
aaatcactggctacaggaggcaatgtcagcgaagccctggcattggttggagaaaaagct
tgttatcagtccattaacagctgtggtggtcagatcttttaccttggaactaagtctgtt
catgtcataacattgagaagctggagagagagagttgaccaccttttgaaacaagagcgt
ctcactgatgccctgactctagcttggtctttttatgaaggtaaagcaaaggctgtagta
ggcttgtctggggacacaagcaagcggaaagcagtcatagcagacagaatggttgaaatc
attctccattacgctgatcgaactttgaagaaatgtcctgaccaagggaaaatccaggtt
atggagcaacattttcaggatgtggtgcctgtcattgttgattattgtctcttactccag
cgcacggatctattatttaatcagatatatgataaaatgagtgagaattctgtagctaaa
ggcatctttctggagtgcttggagccatatatcttaagtgataagctgatgggaatcaca
gctcaagtgatgaaggacttgctgcttcacttccaagacaagaacaggttggaaaattta
gaagcctgcattgtgcatatggatatcaccagcttagacatacagcaggtagttcttctg
tgctgggaaaaccgtctctatgatgccatgatctatgtctacaacagtgggatgaatgac
ttcattagtccaatggagaaactattcaaagtcattgttcctccactgaatgctgggaag
tctctcacagatgagcaggtggtaatgggcaacaagctgcttgtatatataagctgctgc
ttggcaggccgtgcatatccattgggtgatattcctgaagatctggtacctttggttaaa
aatcaggtctttgaatttctcatccggctgcattcaactgaaggatctgtggatgaagag
gtgtaccctcatgttcgtaccttgctgcactttgacactcgggaattccttaatgttctt
gctctgacttttgaagacttcaagaatgacaagcaagctgtggagtatcagcagagaatt
gtggacatacttctgaaagtcatggtagagaattctgacttcaccccatcgcaggttggc
tgtctgtttaccttccttgcccgtcagcttgccaagcccaacaacaccttgtttgtgaac
aggacgctttttgaccaggtccttgaatttctgtgcagtccggatgatgactcccgccat
tcggagaggcaacaggtccttttagaattgctccaggcaggaggaatagtacagtttgaa
gagagccgtcttatccaaatggcagaaaaagcagaattctaccagatttgtgagttcatg
tacgaacgacagcttcgctatgacaaaataattggctgttacctgcgtgatccagtgaga
aaggaagaagttttcaactatattcacaacatcctgtccatgcctggctacagtgttgaa
gaaaagcagtcggtgtggcagaaagctttggaacatatagaggagttgctgttgctgagc
ccatgtaaagcagccgacctggtagccattcacttcagtgagcagattgagagcatcatt
acaaacctccaggaccagtttttactcttccagtttctgaggagtctccttgatccgaga
gaaggcattaaccaagacctgatacacttaccgccctgcatcactgagcagtttgttgag
ctcctgtgtcaatacagcccagaccaggttttggagacacttaaagtcctggaatactgc
agactggaggaaacaatccagataacccagaaacatcagctccaggaagcttcttcatat
ttactggagaagaagggagatatccatggtgcctttctggttatgcttgagcgattgcag
agcaagttgctgatgcttacacaagatgatgaaaaaaacttaggctcagctggacttccc
ttgctagaaaacattgaagatactttaatgaaaacaattgccctttgccgaaggaattca
cacaatttagaccagcaacagcgagaggccctctggtttccccttctggaggctatgatg
tccccacagaaattatctggttcttcacagtgtcaatactctgaatctttgaagagcttg
acaatgcaagtgctgaacaacatggctgcatttattgctcttcctttaattctgcagaga
attctacaggatccagtttatggaaaagggaaacttggagaaattcaaggacttgtcctg
ggaatgctggacacttttaactatgaacaaacccttttagagacaactacgaatctctta
aaccatgatctccactggtccctgtgtaacttaagagcttctgtcactagagggcttacc
ccaaagcaggattactgctgcatttgtttacagcagtacaaaagaaggcaagaaactgct
gatgaaataattgttttcagctgtggccacttgtaccattcgctgtgtctggtgagtaaa
gagtgtggaacggtaactaaaggcctgatgaggtggatgtgctataaatgcaactcaagt
aacaaggggggaaaactgagcgagaacatctcggagctaaaaaaaggaattggagcatcc
ttggcacagacaagttcagagtctgtcttggatcctcagcaaatccaggcttttgaccaa
ctctgccgactcaaccgaggaacctccagactcgctctcctgacggaactgtctcgtggc
catggtggtgaaaaacatgggctcctcagcatttcccacagtgacctggccaccagcagt
gtcttccagaacgagaacttccagctccatctggtcccccctccgctggctgaagactag
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integrated database retrieval system
