Phalacrocorax aristotelis (European shag): 142062711
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Entry
142062711 CDS
T11493
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04140
Autophagy - animal
parx04148
Efferocytosis
parx05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
142062711 (VPS18)
04148 Efferocytosis
142062711 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
142062711 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
parx04131
]
142062711 (VPS18)
Membrane trafficking [BR:
parx04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
142062711 (VPS18)
Hops complex
142062711 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf-RING_Vps41
zf-RING_16
zf-RING_5
zf-RING_11
zf-RING_UBOX
zf-ANAPC11
Lact-deh-memb
zf-RING_2
zf_RING_Vps8
STX17_N
Nup54_57_C
LETM1_C
DUF5600
zf-rbx1
TMEM249
DUF1664
Motif
Other DBs
NCBI-GeneID:
142062711
NCBI-ProteinID:
XP_074961659
LinkDB
All DBs
Position
10:19074580..19086974
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AA seq
974 aa
AA seq
DB search
MASILDEYEDSLYRSASVQQSRVSVGIPHSGYVNARLEKETPIFNKQRIDFAPPEKINSL
VVSSNQLCMSLGKDTLLRIDLGKPDEPNQVELGRKDEAKVYKMFLDHTGSHLLIALNTSE
CLYLNRSVQKVRALSRWKGHLIESVGWNKFLGSETNTGPILVGTAQGQIYEAEISVSEGS
LFSTNPDQYFRQVYTLEEESGPAPVCCLEIERGIEGKFFIIATTGKRLFQFVGKVPEGTE
QQGFSSIFAIHADHLPSFREFPASFGFSEIAFYTPKLRSNPRSFAWMMGNGVLYGTLDYS
RPDSILSDERVWVYPSDIDITVNKPISIVLTQFHFLLLLPDRVKAVCTLNGQVVFQDLFL
EKFGLLTRMIKDPTVQQIWIHTEKVVFRYHVQRESRDVWKMYMNMNKFDLAKEYCKDRPE
CLDIVLAKEAEHCFQNKRYLDSAKCYALTQNYFEEIALRFIEAKQEEALMEFLIKKLSNL
KPSEKTQATLLTTWLTELYLNWLGILEGDPSQRNLYLDTREKFRTFLSSPKNKDCLFNNR
ASIYELLASHGDTEHMVYFAVIMQDYERVVAHHCQHDEYDEALNVLARHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGSRLDARNLIPALVNYSQSASTQQINEAIRYMEFCVYQLEVTQ
QAIHNYLLSLYALCRPDSLLSYLEQAGTNPNRIHYDLKYALRLCAEHGHHHACVHIYKVM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
ALLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLLQAVFPNLPAYKQAKLEDLQK
KLAATSQPSKSHHRPKDTDTISLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEEMQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatcctggacgagtacgaagattccctctaccgctccgcgtccgtacagcag
agccgcgtcagcgtgggcatcccgcactcaggatatgtgaatgcacgactggagaaggaa
acaccaatatttaacaagcaaaggattgattttgctcctccagagaaaattaacagctta
gtggtctcctctaaccagctctgtatgagccttggcaaagacacccttctcaggattgat
cttgggaagccggatgaacctaatcaggtagagctgggacgcaaagatgaagccaaagtc
tacaagatgtttttggaccacacaggctctcatctcctgattgctctgaacaccagtgaa
tgcctctacctgaacagaagtgttcagaaagtgcgagcactctcccgctggaaaggccac
ttgattgaaagcgtgggctggaacaaatttcttggttcagagaccaacactgggcctatc
ctggtgggaacagcccaggggcagatctatgaggctgaaatctctgtcagcgagggaagc
ctcttcagcactaatcctgaccagtacttccgacaggtctacactctggaggaggaatca
ggacctgccccagtctgctgcttggagattgaacgagggatagaagggaaattttttatt
atagccaccactggaaagagactcttccagtttgttggcaaagtgcctgaagggacagag
cagcaaggcttcagctccatatttgctatacatgctgaccatttgcccagcttcagggag
tttccggccagctttggtttcagtgagatagccttttataccccaaaactgcgctccaac
ccgcgctcctttgcctggatgatgggaaatggcgttttatatggtacattggattatagc
cgtcctgattcaattctgagtgatgaacgggtctgggtttatccttctgatattgacata
actgtgaacaagccaatatccattgtacttactcagtttcacttcctgttgctgctgcct
gatcgggtgaaggctgtatgcactctgaatgggcaggttgtttttcaagatctgtttctg
gagaagtttggcttactgacacgtatgatcaaagatcccacagtccagcagatatggatc
cacactgagaaagtagtgttccgctaccacgtccagcgggaatctagggatgtgtggaag
atgtatatgaatatgaacaaatttgatttagccaaagagtattgtaaagatcgtccagag
tgcctagatattgtgctggcaaaagaggcagagcactgcttccaaaacaagcggtatcta
gacagtgccaaatgttatgcactgacccagaactactttgaggaaattgcgcttaggttc
attgaagccaagcaagaagaggccctgatggagtttctgattaagaagctaagtaaccta
aagccttctgagaagacacaggcaactctgctgaccacatggctaacagagctgtacctg
aactggctaggtatattggaaggagatccctcacagcgaaatctctatttggatacacgg
gagaagtttcgcactttcctgagcagtcctaaaaacaaagactgtctattcaataaccgg
gcatctatttatgagctgttggcaagccatggggacacagagcacatggtgtactttgct
gtcatcatgcaggactatgagcgcgtagtagctcaccactgccagcacgatgagtacgat
gaagctctaaatgtgctggccaggcacagagatgagaagctgttctacaagttctctcca
gtcctcatccagcatattcccaagaaggtagttgatgcttggatttctatgggctctagg
ctggatgccaggaacctcattccagcccttgttaactacagccagagtgccagcacccag
cagatcaatgaagccattagatatatggagttctgtgtctaccagttggaggtaacgcag
caagccattcacaactacctgttgtctctttacgctttgtgtcggccagactcgctactg
tcatacctggagcaagcgggaaccaacccaaacaggatccactatgacctgaagtatgcc
ttgcgcctgtgtgcagagcatgggcatcaccatgcgtgtgtccatatttacaaagtgatg
gaattgtatgaggaggctgtggacctcgccttacaggtggatgttgatctcgccaagtcc
tgtgcagatctccctgaagatgatgaggaactccggaagaagctctggttgaagattgct
cgccatgttgttcaggaagagaaggatgtcaagaaggcaatggcctgcctctccagctgt
gccctgctgaagattgaagacgtcttgccattctttccagactttgtgactattgaccat
ttcaaggaggcaatctgtaactccctggaggactacaacaagcacattgaagagctgaaa
agggagatggaggaagccacacagagtgccaagagaatccgagaggatatccaggagatg
agaaataagtatggctctgtggaacctcaggaaaaatgtgctgcttgtgactttccactt
ctaaaccgccctttttaccttttcctgtgtggtcacatgtttcactatgactgtctcctc
caagcagttttcccaaaccttcctgcctataagcaggcaaaacttgaagatcttcagaag
aagctggcagctaccagtcagccttccaagagccaccatcgtcccaaggacacagatacc
attagtttggggaagggacagcagagccgggaacagatcaaagctgacatcgatgacatt
gtggcagccgaatgtgtgtactgtggtgagctgatgatccggtccattgacaagcctttt
attgatccccaaaagtatgaagaggagatgcaaagctggctgtag
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