Phalacrocorax aristotelis (European shag): 142063409
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Entry
142063409 CDS
T11493
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03013
Nucleocytoplasmic transport
parx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142063409 (UPF3B)
03015 mRNA surveillance pathway
142063409 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142063409 (UPF3B)
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142063409 (UPF3B)
mRNA cycle factors
P-body specific factors
142063409 (UPF3B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
142063409
NCBI-ProteinID:
XP_074963249
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Position
11:complement(17210467..17218571)
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AA seq
480 aa
AA seq
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MKEDKENARPKERRGPAAGSGALLGTGTGTGTGTDGRGGGAELDRLERPKDKKETLSKVV
IRRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRF
DGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDEKL
TSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERR
KWKEEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLEKKEKSKKLEK
EALREEKIASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFERDREYERAQREKLRR
QEEERRRQKERFEKEKVFRRKEEEVKKERDLLREKGKKSDLTDFTSSTDKSEKVTKEDKK
EDTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKPTDQGADKKQEGETSNMKEEE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggaaaacgccaggcccaaggagcggcgggggcccgctgctgggtcg
ggggccctgctggggaccggcaccgggactgggaccggcacggatggcaggggcggcggc
gccgagctcgaccgcctggagcgacctaaggacaagaaggagacgctcagcaaggtggtg
atccgccggctcccgcccagcctgaccaaggagcaactggaggagcatctccagcccctg
cccgagcacgactacttcgagttcttcgccaacgactccagcttgtacccgcacatgttc
tccagagcctacatcaactttaaaaaccaggaagacatagtcctcttcagggatcgcttt
gacggctatgttttcgttgaccacaaaggtcaggaatatgctgccatagttgagtttgca
cctttccagaaagctgcaaaaaagaagagtaagaaaaaggatgccaaaactggaactatc
gaagatgatccagagtacaagaaatttttggaaagttacagtgcagatgatgagaaatta
acctccactcctgaaactttgctggaggaaatagaggcaagaaacaaagagctaatagct
aaaaagactactcctttattgaacttcttgaaaaataagcagagactgagagaagaaaaa
agagaggagaggaggaggagagaattggaaagaaaaagacaaagggaagaggaaagaaga
aaatggaaagaggaggagagaaggaagagaaaagaagcagaaaaactgaagaaagtagac
agatgcccagaaaaagaaagagacagatcaaaagaagaaccaaagattaagctacttaag
aagcctgaaaaagatgaaaaagacttggagaaaaaagaaaaatccaagaaactggaaaaa
gaggctctgagggaggaaaaaattgcgagtagtgcatctgccaaacgatctgatggggag
acaaaagaagagaaggcgaaaaaatcagaagatgagtgtgtaaaggactacagggaccga
gatagagattttgaaagagacagagaatatgagagagcacagagggagaaactgaggcgc
caagaagaggagcgtcggaggcagaaagagcgctttgagaaagagaaggtttttagaaga
aaagaggaagaggtgaaaaaggagagagacttactcagagaaaagggaaagaaaagtgat
cttacagactttaccagcagcacggacaaatctgagaaagtaaccaaagaggataaaaaa
gaggatacaattaaaagggatcgtatcagaaacaaggatcgtccagcaatgcagctgtac
cagccaggagcgcgaagccgaagcagattgtgtcagtatgaagacagtgctgcaaagccc
acagatcagggtgcggataagaaacaggagggtgagaccagtaatatgaaggaagaggag
tga
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